<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14898

Description Uncharacterized protein
SequenceMRNISSKLLIMEKRTSEHLERRKQLRNQLQLANTGQALQGGNSSVRPEAGMMATPRPTSQPMMPQTSGLVPNQHMVYPRTTNLQIEVEQKHPGVMTIPDQRPKFQPKGITTVRPGVSPWQMQSGASQSQSKYASRQAQTTNFVGCSPPSVSKPARGLTSLHNHQPGQNGSSVGKQQPQLTRMNQRSLSANQQEMDMQKYQMLIAQQTDISKMQPSQLGGWNNQKDTRQSNLLRSPVEASEREPVTSPLQQIADAQQSTLLCQNSQNTATMDSAREYDLIEGMFLQQIKSWKDAYFTQFVELERRIVVPTLTEEQFLSLPEAKANEYKRKAYAKKSIRKILNFLLLVKSDVNEGLKLDFPKYKEDIHKLVAFIDRGKAHNAEMNTGYQLQNCHEQPQVINLTGNASSISGGKSRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPSFSSPGSLPSCSSNMFESSTPTPVANPVVAPASCCAPLIPMDVDSISAFLLHDNSAPPSPKVNGSDQVTRTKLTIPSSPCQADIAAGQAEVQAGGGDGTPVTEKPIDRLLDAIRSSSPAALRSSANSIWSVLSISDTVPHGQIGANMDGKFFQQQWGGYNTVRKMKRVFNDTATHSESLPLGSMDGSCMAFECDASNSGSSSEQNIKRPKTPNANDALLKEIKSINDTLIDTVVSISMDGIAPCDSGTTIKLSYSAVSLSPAVKSLFATSETSLVLPMKLFVPADYPSSSPVPISDEGDEVPRRNSSAISASVDVAYRHVLRGLLEPLSIEAMARAW
Length789
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.525
Instability index59.04
Isoelectric point8.87
Molecular weight85994.15
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14898
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.17|      34|      44|      38|      73|       1
---------------------------------------------------------------------------
   38-   73 (60.41/40.01)	LQGGNSSVRPeaGMMATP..RPTSQP..MMPQTSGLVPNQ
   83-  120 (55.76/31.27)	LQIEVEQKHP..GVMTIPdqRPKFQPkgITTVRPGVSPWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.88|      26|      26|     314|     339|       2
---------------------------------------------------------------------------
  314-  339 (42.58/31.44)	QFLSLPEAKANEYKRKAYA..KKSIRKI
  341-  368 (38.30/27.54)	NFLLLVKSDVNEGLKLDFPkyKEDIHKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.46|      26|      27|     132|     157|       3
---------------------------------------------------------------------------
  132-  157 (45.47/21.95)	YASRQAQTTNFVGCSPPSVSK.PARGL
  161-  187 (41.99/19.76)	HNHQPGQNGSSVGKQQPQLTRmNQRSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.77|       9|      53|     635|     646|       4
---------------------------------------------------------------------------
  635-  646 (11.21/21.12)	SMDGscMAfECD
  689-  697 (20.56/13.77)	SMDG..IA.PCD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.39|      29|      55|     188|     216|       5
---------------------------------------------------------------------------
  188-  216 (49.17/28.90)	SANQQEMDMQKYQMLIAQQTDISKMQPSQ
  218-  245 (44.82/25.69)	GGWNNQKDTRQSNLL.RSPVEASEREPVT
  246-  265 (34.39/17.99)	SPLQQIADAQQSTLLC.........QNSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.94|      20|      55|     436|     459|       6
---------------------------------------------------------------------------
  392-  435 (20.57/10.31)	HEQPQVINLTGNASsisggksrqqkqPADTSilqsrqtnmartP
  438-  457 (38.37/18.18)	HEQSNGNHLLGIAS............PSFSS............P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.74|      17|      34|     462|     478|       7
---------------------------------------------------------------------------
  462-  478 (31.73/16.48)	SCSSNMF..ESSTPTPVAN
  497-  515 (25.01/11.54)	SISAFLLhdNSAPPSPKVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14898 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NISSKLLIMEKRTSEHLERRKQLRNQLQLANTGQALQGGNSSVRPEAGMMATPRPTSQPMMPQTSGLVPNQHMVYPRTTNLQIEVEQKHPGVMTIPDQRPKFQPKGITTVRPGVSPWQMQSGASQSQSKYASRQAQTTNFVGCSPPSVSKPARGLTSLHNHQPGQNGSSVGKQQPQLTRMNQRSLSANQQEMDMQKYQMLIAQ
2) NLTGNASSISGGKSRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIAS
3) SKMQPSQLGGWNNQKDTRQSNLLRSPVEASEREPVTSPLQ
3
399
210
205
451
249










Molecular Recognition Features






MoRF SequenceStartStop




NANANA