<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14894

Description Uncharacterized protein
SequenceTSKLARYYQPRYAPDSQEAQRFVANFEELALRGTNSKEDYMRNISSKLLIMEKRTSEHLERRKQLRNQLQLANTGQALQGGNSSVRPEAGMMATPRPTSQPMMPQTSGLVPNQHMVYPRTTNLQIEVEQKHPGVMTIPDQRPKFQPKGITTVRPGVSPWQMQSGASQSQSKYASRQAQTTNFVGCSPPSVSKPARGLTSLHNHQPGQNGSSVGKQQPQLTRMNQRSLSANQQEMDMQKYQMLIAQQTDISKMQPSQLGGWNNQKDTRQSNLLRSPVEASEREPVTSPLQQIADAQQSTLLCQNSQNTATMDSAREYDLIEGMFLQIKSWKDAYFTQFVELERRIVVPTLTEEQFLSLPEAKANEYKRKAYAKKSIRKILNFLLLVKSDVNEGLKLDFPKYKEDIHKLVAFIDRGKAHNAEMNTGYQLQNCHEQPQVINLTGNASSISGGKSRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPSFSSPGSLPSCSSNMFESSTPTPVANPVVAPASCCAPLIPMDVDSISAFLLHDNSAPPSPKVNGSDQVTRTKLTIPSSPCQADIAAGQAEVQAGGGDGTPVTEKPIDRLLDAIRSSSPAALRSSANSIWSVLSISDTVPHGQIGANMDGKFFQQQWGGYNTVRKMKRVFNDTATHSESLPLGSMDGSCMAFECDASNSGSSSEQNIKRPKTPNANDALLKEIKSINDTLIDTVVSISMDGIAPCDSGTTIKLSYSAVSLSPAVKSLFATSETSLVLPMKLFVPADYPSSSPVPISDEGDEVPRRNSSAISASVDVAYRHVLRGLLEPLSIEAMARAWDACV
Length832
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.544
Instability index58.66
Isoelectric point8.74
Molecular weight90950.52
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14894
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.62|      36|      44|      78|     113|       1
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   31-   68 (40.35/21.24)	LRGTNSKedyMRNiSSKLLIME..KRTSEH..LERRKQ..LRNQ
   78-  113 (65.96/39.65)	LQGGNSS...VRP.EAGMMATP..RPTSQP..MMPQTSGLVPNQ
  123-  160 (49.30/27.67)	LQIEVEQ...KHP...GVMTIPdqRPKFQPkgITTVRPGVSPWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.46|      26|      27|     172|     197|       2
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  172-  197 (45.47/22.36)	YASRQAQTTNFVGCSPPSVSK.PARGL
  201-  227 (41.99/20.13)	HNHQPGQNGSSVGKQQPQLTRmNQRSL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.77|       9|      53|     674|     685|       3
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  674-  685 (11.21/18.21)	SMDGscMAfECD
  728-  736 (20.56/11.82)	SMDG..IA.PCD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.94|      20|      55|     475|     498|       4
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  431-  474 (20.57/12.10)	HEQPQVINLTGNASsisggksrqqkqPADTSilqsrqtnmartP
  477-  496 (38.37/21.05)	HEQSNGNHLLGIAS............PSFSS............P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.88|      26|      26|     353|     378|       5
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  353-  378 (42.58/36.96)	QFLSLPEAKANEYKRKAYA..KKSIRKI
  380-  407 (38.30/32.38)	NFLLLVKSDVNEGLKLDFPkyKEDIHKL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     167.55|      52|     232|     518|     603|       6
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  546-  603 (79.49/81.08)	SAPPSPKVNGSDQVTRTKltipSSPCQADIAAGQAEVQAGGGDgtPVTEKPIDRLLDA
  779-  830 (88.06/34.18)	SSSPVPISDEGDEVPRRN....SSAISASVDVAYRHVLRGLLE..PLSIEAMARAWDA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.38|      35|     234|     269|     303|       8
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  269-  303 (59.34/30.62)	SNLLRSPVEASEREPVTSPLQQIA.......DAQQSTLLCQN
  504-  545 (56.04/28.55)	SNMFESSTPTPVANPVVAPASCCAplipmdvDSISAFLLHDN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14894 with Med15 domain of Kingdom Viridiplantae
Unable to open file!