<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14891

Description Uncharacterized protein
SequenceMRNISSKLLIMEKRTSEHLERRKQLRNQLQLANTGQALQGGNSSVRPEAGMMATPRPTSQPMMPQTSGLVPNQHMVYPRTTNLQIEVEQKHPGVMTIPDQRPKFQPKGITTVRPGVSPWQMQSGASQSQSKYASRQAQTTNFVGCSPPSVSKPARGLTSLHNHQPGQNGSSVGKQQPQLTRMNQRSLSANQQEMDMQKYQMLIAQQTDISKMQPSQLGGWNNQKDTRQSNLLRSPVEASEREPVTSPLQQIADAQQSTLLCQNSQNTATMDSAREYDLIEGMFLQLQIKSWKDAYFTQFVELERRIVVPTLTEEQFLSLPEAKANEYKRKAYAKKSIRKILNFLLLVKSDVNEGLKLDFPKYKEDIHKLVAFIDRGKAHNAEMNTGYQLQNCHEQPQVINLTGNASSISGGKRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPSFSSPGSLPSCSSNMFESSTPTPVANPVVAPASCCAPLIPMDVDSISAFLLHDNSAPPSPKVNGSDQVTRTKLTIPSSPCQADIAAGQAEVQAGGGDGTPVTEKPIDRLLDAIRSSSPAALRSSANSIWSVLSISDTVPHGQIGANMDGKFFQQQWGGYNTVRKMKRVFNDTATHSESLPLGSMDGSCMAFECDASNSGSSSEQNIKRPKTPVTRLVISFLSSFQSNAHIFFYLLKLT
Length690
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.588
Instability index62.07
Isoelectric point9.35
Molecular weight75800.83
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14891
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.17|      22|      26|      55|      79|       1
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   34-   52 (25.97/ 6.71)	.....TGQA..LQGGNSSVRPEAGMM
   55-   76 (43.04/26.39)	P..RPTSQP..MMPQTSGLVPNQHMV
   98-  120 (22.16/ 6.84)	PdqRPKFQPkgITTVRPGVSPWQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.46|      26|      27|     132|     157|       2
---------------------------------------------------------------------------
  132-  157 (45.47/27.46)	YASRQAQTTNFVGCSPPSVSK.PARGL
  161-  187 (41.99/24.73)	HNHQPGQNGSSVGKQQPQLTRmNQRSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.88|      26|      26|     315|     340|       3
---------------------------------------------------------------------------
  315-  340 (42.58/34.84)	QFLSLPEAKANEYKRKAYA..KKSIRKI
  342-  369 (38.30/30.57)	NFLLLVKSDVNEGLKLDFPkyKEDIHKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.62|      18|      20|     446|     463|       4
---------------------------------------------------------------------------
  446-  463 (32.47/20.33)	LLGIASPS.FSSPGSLP.SC
  467-  486 (24.15/12.99)	MFESSTPTpVANPVVAPaSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.63|      15|      21|     380|     396|       6
---------------------------------------------------------------------------
  380-  396 (23.94/21.56)	NAEMNTGYQLQncHEQP
  404-  418 (26.69/15.41)	NASSISGGKRQ..QKQP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14891 with Med15 domain of Kingdom Viridiplantae
Unable to open file!