<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14889

Description Uncharacterized protein
SequenceMDSAREYDLIEGMFLQIKSWKDAYFTQFVELERRIVVPTLTEEQFLSLPEAKANEYKRKAYAKKSIRKILNFLLLVKSDVNEGLKLDFPKYKEDIHKLVAFIDRGKAHNAEMNTGYQLQNCHEQPQVINLTGNASSISGGKSRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPSFSSPGSLPSCSSNMFESSTPTPVANPVVAPASCCAPLIPMDVDSISAFLLHDNSAPPSPKVNGSDQVTRTKLTIPSSPCQADIAAGQAEVQAGGGDGTPVTEKPIDRLLDAIRSSSPAALRSSANSIWSVLSISDTVPHGQIGANMDGKFFQQQWGGYNTVRKMKRVFNDTATHSESLPLGSMDGSCMAFECDASNSGSSSEQNIKRPKTPNANDALLKEIKSINDTLIDTVVSISMDGIAPCDSGTTIKLSYSAVSLSPAVKSLFATSETSLVLPMKLFVPADYPSSSPVPISDEGDEVPRRNSSAISASVDVAYR
Length500
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.344
Instability index54.31
Isoelectric point5.97
Molecular weight53876.10
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14889
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.86|      28|      38|     400|     427|       1
---------------------------------------------------------------------------
  344-  376 (21.75/10.06)	.VRKMKRVfNDTAThsESLPLGSMDGscMAfECD
  400-  427 (46.44/29.49)	LLKEIKSI.NDTLI..DTVVSISMDG..IA.PCD
  441-  467 (38.67/23.37)	LSPAVKSL.FAT.S..ETSLVLPMKL..FV.PAD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.43|      16|      20|     176|     193|       4
---------------------------------------------------------------------------
  176-  191 (26.46/ 8.94)	LLGIASPS.FSSPGSLP
  197-  213 (20.97/ 8.64)	MFESSTPTpVANPVVAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14889 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NLTGNASSISGGKSRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIAS
129
181










Molecular Recognition Features






MoRF SequenceStartStop




NANANA