<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14888

Description Uncharacterized protein
SequenceMNTGYQLQNCHEQPQVINLTGNASSISGGKRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPSFSSPGSLPSCSSNMFESSTPTPVANPVVAPASCCAPLIPMDVDSISAFLLHDNSAPPSPKVNGSDQVTRTKLTIPSSPCQADIAAGQAEVQAGGGDGTPVTEKPIDRLLDAIRSSSPAALRSSANSIWSVLSISDTVPHGQIGANMDGKFFQQQWGGYNTVRKMKRVFNDTATHSESLPLGSMDGSCMAFECDASNSGSSSEQNIKRPKTPNANDALLKEIKSINDTLIDTVVSISMDGIAPCDSGTTIKLSYSAVSLSPAVKSLFATSETSLVLPMKLFVPADYPSSSPVPISDEGDEVPREEFQRHLGLSRRGIP
Length388
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.348
Instability index59.87
Isoelectric point5.52
Molecular weight40922.33
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14888
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.00|      33|      38|     205|     237|       1
---------------------------------------------------------------------------
  144-  178 (38.60/19.02)	..TIPSSPCQADIAAGQ..AE..VQAGGGDgtpvTEKPIDR
  205-  237 (60.37/33.34)	SDTVPHGQIGANMDGKF..FQ..QQWGGYN....TVRKMKR
  246-  278 (39.03/19.30)	SESLPLG....SMDGSCmaFEcdASNSGSS....SEQNIKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.87|      14|      42|      11|      24|       2
---------------------------------------------------------------------------
   11-   24 (25.96/17.54)	HEQPQVINLTGNAS
   56-   69 (25.90/17.48)	HEQSNGNHLLGIAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.41|      35|      39|     288|     323|       4
---------------------------------------------------------------------------
  288-  323 (53.36/39.11)	LLKEIKSINDTlIDTVVSISMDGIAPCD..SGTTIKLS
  329-  365 (53.05/34.21)	LSPAVKSLFAT.SETSLVLPMKLFVPADypSSSPVPIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14888 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VINLTGNASSISGGKRQQKQPADTSILQSRQTNMARTPPPHEQSNGNHLLGIASPS
16
71










Molecular Recognition Features






MoRF SequenceStartStop




NANANA