<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14879

Description Uncharacterized protein
SequenceMQGSNKLNAGSNCNDKLPKVNWPHHANAIQSSLSKGDFLSSSFLFSLPTQRANPEANCNTMHSLRSAACKIQGPERLQVPWIEKAWRSVCNTQVTCKNYLRPGLSAKVKDCGRDFALTYAADSSYNAKKLDNVPKSTILSEGSLHQRTESGILEQNSSHRTCTMAYQSNHVVGTTYQSSFARTDAMSCQTVPVADNMCADDKLDAMDDDEILASIDVDRIVMEHYEATNTPRGLASRQMSTPSGNKFNFTGLDENSLPQELSEICSHGYKLAFCPEANYHLQGMKDQLISVSNKLLDGSGELSPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERKRSHSMASTTAAEGHRPPMTPSTFVDNNRSQSQFYDTNGPWDGGSCYTPAPCPYMDSNIPLTSVQRDYTRRNIDISYTDGSGDKKWSSTDFPWTKELEVHNKRVFGNRSFRPNQREIINATMNGSDVFVLMPTGGGKSLTYQLPALIEEGITLVVCPLVSLIQDQIMHLSQANIPATYLSANLEWTEQQRILRDLMSPTSTCNYKLLYVTPEKIAKSDVLLRQLENLYSRGYLSRIVIDEAHCVSQWGQDMISDLITRYFLS
Length599
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.560
Instability index52.80
Isoelectric point6.16
Molecular weight67041.49
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP14879
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     411.72|     101|     117|     228|     333|       1
---------------------------------------------------------------------------
  228-  319 (144.53/90.18)	........................TNT.PRGLASRQMSTPS....GNKFNFTGLDENSLPQELSEICSHGYKLAFCP..EANYHLQGMKDQLI..SVSNKLLDGSGE..LSPQHSEELRQQRAHlNK
  322-  439 (138.34/88.38)	QILGDYMARPtqdderkrshsmasTTA.AEG..HRPPMTPStfvdNNRSQSQFYDTNG.PWDGGS.C...YTPAPCPymDSNIPLTSVQRDYTrrNIDISYTDGSGDkkWSSTDFPWTKELEVH.NK
  440-  527 (128.85/73.65)	RVFGNRSFRP.................nQREIINATMNGSD....VFVLMPTG.GGKSLTYQLPALIEEGITLVVCP..LVSL....IQDQIM..HLSQANIPAT.Y..LS.ANLEWTEQQR.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14879 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SNKLLDGSGELSPQHSEELRQQRAHLNKQIQILGDYMARPTQDDERKRSHSMASTTAAEGHRPPMTPSTFVDNNRSQSQFYDTNGP
292
377










Molecular Recognition Features






MoRF SequenceStartStop




NANANA