<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14878

Description ATP-dependent DNA helicase
SequencePVLALTATATASVKEDVVQALGLANCVVFKQSFNRPNLRYFVMPKTKKCLEDIDRFIRENHHKECGIIYCLSRMDCEKVAEKLREYGHQASHYHGNMEPFDRTQVQRLWSMDKINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYNYSDYVSLVHMITQGSAEQVRSSSSSSHGQALATHKENLLCMVSYCENDVDCRRLLQLIHFGETFDPSHCAKTCDNCKKGLRWIEKDVTNIAKQLVELVLATGQPCSSSHILEVYRGSLNQNVKKNRHDMLPLHGAGKHLAKGEAARVLRNLVTEGILAEDVKKSDTYGSVSSVLKVNQVKVGGLRSGNQIVLKFPTPDKAPKMGKLDESSISQVNKPVQRQSEMDENFSSLLYETLRILRSQIAEAAGCGVHHIFNNETLKEISTRVPRTKEELLEINGIGKVKLNKYGDRVLATLEEFLNQFSSGSKRSSSSGGSNEQNEAVKKRRGFTAIDTSGNGNDFEERTVQSKKHAGKTQNSKQGIADAASVIQDIRYIDVDLDGCEDVDEELCSSVQQPVASGRVLPKWSAGGNAPPPNIFEEFKYTN
Length593
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.484
Instability index46.15
Isoelectric point8.44
Molecular weight65970.03
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14878
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     338.18|     109|     142|      62|     203|       1
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   74-  190 (172.90/185.49)	MDCEKVAeKLREYGHQASHYHgNMEPFDRTQVQRLW.SMDKINIICATVAFGMGINKP....DVRFVIHHSLPKSI.EGYHQECGRAGrDGQRsscvLYYNYSDYVsLVHMITQG.SAEQVRSS
  217-  332 (165.28/101.89)	VDCRRLL.QLIHFGETFDPSH.CAKTCDNCKKGLRWiEKDVTNIAKQLVELVLATGQPcsssHILEVYRGSLNQNVkKNRHDMLPLHG.AGKH....LAKGEAARV.LRNLVTEGiLAEDVKKS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14878 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SGSKRSSSSGGSNEQNEAVKKRRGFTAIDTSGNGNDFEERTVQSKKHAGKTQNSKQGI
473
530










Molecular Recognition Features






MoRF SequenceStartStop




1) PNIFEEFKYTN
2) RVLPKW
583
569
593
574