<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14868

Description Uncharacterized protein
SequencePFNMASLSSPWVEWAGEYTKAAQAEALPPNEWAARVATAAAVAGERGDVQFSAGLAEMLARVLLSGQISSAAPTAAWKYAEAALAARLASPALLLAILSSRVIPQRVARPTAYRLYLELLRRHGFKLCFQMKAANSNKIRQLIDDNLNLSKIFGFSACEPGVFIVELVLCILWQLVDTALDDESLLELTPEKKAQWPTRPQDISAFEVSFPEQKPEKIEKLQRMNSVITIELIGHLLHNKLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRRGETDLSSHWKQKTASDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINETGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVRVLVSSPASSLAELEKLFEVAVNGSDDDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDPADYAGRESQLIKHGPMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVYGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLTASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVHNIVDSLLNLMFTKANKGSTSIGSVSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGIDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFYHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGQISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEILPSWFLSVQDLDRGGDSGGMVYRLGGHALAYFAVYAGMFAWGIDPTAVSRRRERVMGLHLEFLASALDGKISLGCNMFLWRAYVSGFLELVVDRVHCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length1278
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy0.161
Instability index42.65
Isoelectric point6.56
Molecular weight138675.49
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14868
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.62|      14|      16|    1002|    1017|       1
---------------------------------------------------------------------------
 1002- 1016 (25.38/19.74)	SILGMSSTSlCCCGG
 1019- 1032 (29.24/13.03)	SLLGHGFGS.HCSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.76|      13|      16|      10|      24|       2
---------------------------------------------------------------------------
   10-   22 (26.92/19.19)	PWVEWAGEYTKAA
   28-   40 (24.84/10.09)	PPNEWAARVATAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.84|      43|     367|     469|     555|       3
---------------------------------------------------------------------------
  500-  555 (59.94/103.01)	AFMKGTPLTqslvrvlvsSPASSLAELEKLFE..VAVNGSDDDKVSAAtvlcGATLLR
  870-  914 (71.90/30.63)	AFMNGTDWP.........SPAANLSMVEEHIKkiVAATGIDVPRLATG....GTTLGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.46|      16|      16|     268|     283|       4
---------------------------------------------------------------------------
  268-  283 (30.64/16.43)	PLSSPNGHCLGGSYSA
  287-  302 (27.82/14.29)	PIDMYLEDCLDGSIAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.26|      12|      19|      87|      98|       5
---------------------------------------------------------------------------
   87-   98 (19.48/ 9.71)	RLASPA...LLLAIL
  106-  120 (15.78/ 6.47)	RVARPTayrLYLELL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.53|      30|     584|     660|     691|       6
---------------------------------------------------------------------------
  660-  691 (52.70/34.15)	LRLWKfnHPPLEYCIMGDGAPVGSQLTPEYLL
 1245- 1274 (51.83/27.54)	LRQWK..EKELAVAILCRGGPEAMGVAAELIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.28|      27|     584|      51|      77|       7
---------------------------------------------------------------------------
   51-   77 (46.46/28.38)	FS.AGLAEMLARVLLS.GQI.SSAAPTAAW
  609-  638 (37.82/21.66)	FSfHGLVPELATVLMAiCEVyGCLSPSVSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.34|      18|      18|     178|     195|      12
---------------------------------------------------------------------------
  178-  195 (29.29/20.96)	TALDDESLLELT.PEKKAQ
  198-  216 (28.05/19.72)	TRPQDISAFEVSfPEQKPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14868 with Med33 domain of Kingdom Viridiplantae
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