<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14863

Description Uncharacterized protein
SequenceVGTPTNKQQDQHIYSFSYHHLAPTTLATANEATTPGESKPQPRARVRGPPFNMASLSSPWVEWAGEYTKAAQAEALPPNEWAARVATAAAVAGERGDVQFSAGLAEMLARVLLSGQISSAAPTAAWKYAEAALAARLASPALLLAILSSRVIPQRVARPTAYRLYLELLRRHGFKLCFQMKAANSNKIRQLIDDNLNLSKIFGFSACEPGVFIVELVLCILWQLVDTALDDESLLELTPEKKAQWPTRPQDISAFEVSFPEQKPEKIEKLQRMNSVITIELIGHLLHNKVITRILSLARENMQTQWGLFTYRLQLLVANSSTLQASTMSLQAFQQLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRRGETDLSSHWKQKTASDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINETGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVRVLVSSPASSLAELEKLFEVAVNGSDDDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDPADYAGRESQLIKHGPMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVYGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLTASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVHNIVDSLLNLMFTKANKGSTSIGSVSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGIDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFYHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGQISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEILPSWFLSVQDLDRGGDSGGMVYRLGGHALAYFAVYAGMFAWGIDPTAVSRRRERVMGLHLEFLASALDGKISLGCNMFLWRAYVSGFLELVVDRVHCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length1373
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy0.117
Instability index42.81
Isoelectric point6.90
Molecular weight149256.30
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14863
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.62|      14|      16|    1097|    1112|       1
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 1097- 1111 (25.38/19.74)	SILGMSSTSlCCCGG
 1114- 1127 (29.24/13.01)	SLLGHGFGS.HCSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.72|      37|      96|    1179|    1219|       2
---------------------------------------------------------------------------
 1179- 1219 (52.72/55.00)	KRTKYAMG.HGQIsLATAMTQvKVaaSLGATL.VW...LSGGTTLV
 1276- 1317 (54.00/38.65)	RRRERVMGlHLEF.LASALDG.KI..SLGCNMfLWrayVSGFLELV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.76|      13|      16|      59|      73|       3
---------------------------------------------------------------------------
   59-   71 (26.92/19.08)	PWVEWAGEYTKAA
   77-   89 (24.84/ 9.93)	PPNEWAARVATAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.20|      15|      89|      44|      58|       4
---------------------------------------------------------------------------
   44-   58 (28.10/18.51)	ARVRGPPFNMASLSS
  135-  149 (24.10/14.64)	ARLASPALLLAILSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.02|      30|     368|     564|     633|       6
---------------------------------------------------------------------------
  595-  633 (45.11/78.23)	AFMKGTPLTqslvrvlvsSPASSLAELEKLFE..VAVNGSD
  965-  996 (48.92/13.70)	AFMNGTDWP.........SPAANLSMVEEHIKkiVAATGID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.28|      27|     630|     100|     126|       7
---------------------------------------------------------------------------
  100-  126 (46.46/28.37)	FS.AGLAEMLARVLLS.GQI.SSAAPTAAW
  704-  733 (37.82/21.63)	FSfHGLVPELATVLMAiCEVyGCLSPSVSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.53|      30|     584|     755|     786|       9
---------------------------------------------------------------------------
  755-  786 (52.70/41.48)	LRLWKfnHPPLEYCIMGDGAPVGSQLTPEYLL
 1340- 1369 (51.83/33.52)	LRQWK..EKELAVAILCRGGPEAMGVAAELIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.46|      16|      18|     363|     378|      10
---------------------------------------------------------------------------
  363-  378 (30.64/22.77)	PLSSPNGHCLGGSYSA
  382-  397 (27.82/19.84)	PIDMYLEDCLDGSIAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     120.74|      41|     342|     507|     553|      16
---------------------------------------------------------------------------
  507-  533 (35.68/16.51)	....................................................................................................................................................................................................................................................................................................................................ESLLVPPPCIISAANQAASKAAM....LVSG
  534-  553 ( 5.08/ 9.15)	INSSSGymesinETGNMRHL...............................................................................................................................................................................................................................................................................................................................................
  858-  880 (25.26/ 8.93)	....................ivescisrnlldtsayywpgyinghvnsmshaipsqlagwaafmkgtpltqslvrvlvsspasslaeleklfevavngsdddkvsaatvlcgatllrgwnfqehtvrlvvkllshsdpadyagresqlikhgpmlnviltgispvdyapifsfhglvpelatvlmaicevygclspsvswtlgageeisahtvfsnafilllrlwkfnhppleycimgdgapvgsqltpeyllllrnsqvltassssksrssqkqlpvtssrssqnpifmdsfpklklwyrqhqaclastlsglahgtpvhnivDSLL...NLMFTKANKGSTSIGS.....VSG
  884-  934 (54.71/32.08)	ISNSSG......PGGDDSHL.........................................................................................................................................................................................................................................................................................................wpqlpawE.ILEAVPFVVDAALTACSHGRLfpreLATG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.58|      17|      18|    1129|    1146|      20
---------------------------------------------------------------------------
 1129- 1146 (27.39/24.16)	SPVAPGILYLRIFrCIKD
 1148- 1164 (27.19/17.94)	SILAEDILSLLML.SVKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14863 with Med33 domain of Kingdom Viridiplantae
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