<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14860

Description Uncharacterized protein
SequenceMASLSSPWVEWAGEYTKAAQAEALPPNEWAARVATAAAVAGERGDVQFSAGLAEMLARVLLSGQISSAAPTAAWKYAEAALAARLASPALLLAILSSRVIPQRVARPTAYRLYLELLRRHGFKLCFQMKAANSNKIRQLIDDNLNLSKIFGFSACEPGVFIVELVLCILWQLVDTALDDESLLELTPEKKAQWPTRPQDISAFEVSFPEQKPEKIEKLQRMNSVITIELIGHLLHNKVITRILSLARENMQTQWGLFTYRLQLLVANSSTLQASTMSLQAFQQLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRRGETDLSSHWKQKTASDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINETGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVRVLVSSPASSLAELEKLFEVAVNGSDDDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDPADYAGRESQLIKHGPMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVYGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLTASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVHNIVDSLLNLMFTKANKGSTSIGSVSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGIDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFYHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGQISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEILPSWFLSVQDLDRGGDSGGMVYRLGGHALAYFAVYAGMFAWGIDPTAVSRRRERVMGLHLEFLASALDGKISLGCNMFLWRAYVSGFLELVVDRVHCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length1321
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy0.162
Instability index42.63
Isoelectric point6.68
Molecular weight143558.11
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14860
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.62|      14|      16|    1045|    1060|       1
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 1045- 1059 (25.38/19.05)	SILGMSSTSlCCCGG
 1062- 1075 (29.24/12.52)	SLLGHGFGS.HCSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.76|      13|      16|       7|      21|       2
---------------------------------------------------------------------------
    7-   19 (26.92/18.28)	PWVEWAGEYTKAA
   25-   37 (24.84/ 9.57)	PPNEWAARVATAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.96|      43|     367|     512|     598|       3
---------------------------------------------------------------------------
  543-  598 (58.86/98.69)	AFMKGTPLTqslvrvlvsSPASSLAELEKLFE..VAVNGSDDDKVsaATvlCGATLLR
  913-  957 (73.09/29.82)	AFMNGTDWP.........SPAANLSMVEEHIKkiVAATGIDVPRL..AT..GGTTLGR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.18|      41|     367|     726|     826|       4
---------------------------------------------------------------------------
  786-  826 (70.48/113.29)	ACLASTLSGLAHGTP.VHNIVDSLLNLMFTKA...NKGSTSIGSV
 1151- 1195 (63.69/15.90)	ASLGATLVWLSGGTTlVQSLFQEILPSWFLSVqdlDRGGDSGGMV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.46|      16|      16|     311|     326|       5
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  311-  326 (30.64/19.37)	PLSSPNGHCLGGSYSA
  330-  345 (27.82/16.85)	PIDMYLEDCLDGSIAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.75|      13|      17|      57|      69|       6
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   57-   69 (19.33/11.53)	ARVLLSGQISSAA
   77-   89 (18.42/10.57)	AEAALAARLASPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.53|      30|     584|     703|     734|       7
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  703-  734 (52.70/37.68)	LRLWKfnHPPLEYCIMGDGAPVGSQLTPEYLL
 1288- 1317 (51.83/30.41)	LRQWK..EKELAVAILCRGGPEAMGVAAELIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.78|      14|      16|    1080|    1094|       8
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 1080- 1094 (22.03/21.57)	APGILYLRIFrCIKD
 1099- 1112 (22.76/15.69)	AEDILSLLML.SVKD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.39|      17|      20|     170|     189|       9
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  170-  189 (25.79/22.67)	WqlvDTALDDESLLELT.....PEK
  193-  214 (27.60/15.78)	W...PTRPQDISAFEVSfpeqkPEK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.66|      40|     215|     624|     665|      15
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  624-  665 (66.03/42.51)	GRESQLIKHGPMLNvILTGIsP..VDYAPIFSFHG.LVP.ELATVL
  840-  883 (63.63/33.40)	GDDSHLWPQLPAWE.ILEAV.PfvVDAALTACSHGrLFPrELATGL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14860 with Med33 domain of Kingdom Viridiplantae
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