<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14859

Description Uncharacterized protein
SequenceMGRGVHQGGASGGAPAERVGGAGGHSGGGRGGKRGRTVFGRAGRNAGARAPLWANQQRRPHRGVEVRRGCPRRAPRVTGAPPRDPLLKRVIPQRVARPTAYRLYLELLRRHGFKLCFQMKAANSNKIRQLIDDNLNLSKIFGFSACEPGVFIVELVLCILWQLVDTALDDESLLELTPEKKAQWPTRPQDISAFEVSFPEQKPEKIEKLQRMNSVITIELIGHLLHNKVITRILSLARENMQTQWGLFTYRLQLLVANSSTLQASTMSLQAFQQLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRRGETDLSSHWKQKTASDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINETGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVRVLVSSPASSLAELEKLFEVAVNGSDDDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDPADYAGRESQLIKHGPMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVYGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLTASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVHNIVDSLLNLMFTKANKGSTSIGSVSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGIDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFYHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGQISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEILPSWFLSVQDLDRGGDSGGMVYRLGGHALAYFAVYAGMFAWGIDPTAVSRRRERVMGLHLEFLASALDGKISLGCNMFLWRAYVSGFLELVVDRVHCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length1312
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy0.069
Instability index44.18
Isoelectric point8.64
Molecular weight142665.01
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14859
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.08|      18|      18|       2|      19|       1
---------------------------------------------------------------------------
    2-   19 (34.93/16.29)	GRGVHQGGASGGAPAERV
   21-   38 (35.14/16.43)	GAGGHSGGGRGGKRGRTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     832.21|     280|     367|     503|     817|       2
---------------------------------------------------------------------------
  503-  817 (429.09/385.14)	LDTSAY.............YWPGYINGHVNSMSHAIPSQLAGW..............AAFMKGTPLTqslvrvlvsSPASSLAELEKLFE..VAVNGSDDDKVsaATvlCGATL....LRGWNFQEHTV.....RLVVKLLSHSDPA..DYAGResqlikhgPMLNVILTGISP.....VDYApIFS......FHGlvPELATVLMAIC..EVYGCLSPSVSwTLGAGEEISAHTVFSNAFILLLRLwkfnHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSqVLTASSSSKSRSSQKQLPVTSSRSSQNPI.FMDSFPKLKLwyrqhQACLASTLSGLAHGTP.VHNIVDSLLNLMFTKA...NKGSTSIGSV
  846- 1186 (403.12/278.81)	LEAVPFvvdaaltacshgrLFPRELATGLKDLADFLPASTATIvsyfsaevtrgvwkPAFMNGTDWP.........SPAANLSMVEEHIKkiVAATGIDVPRL..AT..GGTTLgrlpLPLAAFVSLTItykldKASERFLNLAGPAleNLAAS.....cpwPSMAIVAALWTQkvkrwSDFL.VFSasrtvfYHN..NDAVVQLLRSCftSILGMSSTSLC.CCGGVASLLGHGFGSHCSGGLSPV....APGILYLRIFRCIKDCSILAEDILSLLMLS.VKDIAETTVSRHGSDKLKRTKYAMGHGQIsLATAMTQVKV.....AASLGATLVWLSGGTTlVQSLFQEILPSWFLSVqdlDRGGDSGGMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.12|      19|      20|      60|      78|       3
---------------------------------------------------------------------------
   60-   78 (36.53/20.98)	PHRGVEVRRGCPRRAPRVT
   81-   99 (33.60/18.72)	PPRDPLLKRVIPQRVARPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.43|      44|     336|     116|     163|       4
---------------------------------------------------------------------------
  116-  163 (67.49/58.18)	CFqMKAAN..SNKIRQLIdDNLNLSKIFGFSACEPGV...FIVElvLCILWQL
  454-  502 (64.94/41.03)	CI.ISAANqaASKAAMLV.SGINSSSGYMESINETGNmrhLIVE..SCISRNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.77|      12|      24|     172|     183|       5
---------------------------------------------------------------------------
  172-  183 (20.71/12.85)	SLLELTPEK..KAQ
  197-  210 (18.05/10.27)	SFPEQKPEKieKLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.46|      16|      18|     302|     317|       6
---------------------------------------------------------------------------
  302-  317 (30.64/23.03)	PLSSPNGHCLGGSYSA
  321-  336 (27.82/20.05)	PIDMYLEDCLDGSIAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14859 with Med33 domain of Kingdom Viridiplantae
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