<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14857

Description Uncharacterized protein
SequenceMSLQAFQQLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWIPIDMYLEDCLDGSIAATNSIEILTGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRRGETDLSSHWKQKTASDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINETGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVRVLVSSPASSLAELEKLFEVAVNGSDDDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDPADYAGRESQLIKHGPMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVYGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLTASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVHNIVDSLLNLMFTKANKGSTSIGSVSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGIDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFYHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGQISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEILPSWFLSVQDLDRGGDSGGMVYRLGGHALAYFAVYAGMFAWGIDPTAVSRRRERVMGLHLEFLASALDGKISLGCNMFLWRAYVSGFLELVVDRVHCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length1046
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy0.181
Instability index44.20
Isoelectric point6.49
Molecular weight113161.23
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14857
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.33|      19|      24|     344|     365|       1
---------------------------------------------------------------------------
  344-  365 (27.72/28.41)	PADYAGRESqLikHG..PMLNVIL
  370-  390 (32.61/20.42)	PVDYAPIFS.F..HGlvPELATVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.64|      17|      17|     770|     786|       2
---------------------------------------------------------------------------
   38-   49 (18.38/ 7.83)	.....SSPNGHCLGG...SY
  770-  786 (34.42/22.75)	SILGMSSTSLCCCGG...VA
  787-  805 (26.84/15.70)	SLLGHGFGS.HCSGGlspVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.71|      52|     368|     237|     323|       3
---------------------------------------------------------------------------
  237-  299 (82.51/57.31)	LDTSAYYWPGYINGHVNSMSHAIPSQLagW.AAFMKGTPLTqslvrvlvsSPASSLAELEKLFE
  608-  660 (88.20/41.58)	LKDLADFLPASTATIVSYFSAEVTRGV..WkPAFMNGTDWP.........SPAANLSMVEEHIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.99|      10|      17|     144|     153|       4
---------------------------------------------------------------------------
  144-  153 (17.69/10.62)	DSRRGETDLS
  163-  172 (17.30/10.23)	DDLRKELMLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.08|      11|      17|     808|     819|       5
---------------------------------------------------------------------------
  808-  819 (16.21/16.84)	ILYLRIFrCIKD
  827-  837 (17.86/11.75)	ILSLLML.SVKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.18|      41|     367|     511|     551|       6
---------------------------------------------------------------------------
  511-  551 (70.48/38.64)	ACLASTLSGLAHGTP.VHNIVDSLLNLMFTKA...NKGSTSIGSV
  876-  920 (63.69/34.25)	ASLGATLVWLSGGTTlVQSLFQEILPSWFLSVqdlDRGGDSGGMV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.07|      16|     396|     173|     206|       7
---------------------------------------------------------------------------
  173-  189 (24.31/44.14)	LQALGDYESLLVpPPCI
  217-  232 (28.76/ 7.45)	INETGNMRHLIV.ESCI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14857 with Med33 domain of Kingdom Viridiplantae
Unable to open file!