<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14856

Description Uncharacterized protein
SequenceTNKQQDQHIYSFSYHHLAPTTLATANEATTPGESKPQPRARVRGPPFNMASLSSPWVEWAGEYTKAAQAEALPPNEWAARVATAAAVAGERGDVQFSAGLAEMLARVLLSGQISSAAPTAAWKYAEAALAARLASPALLLAILSSRVIPQRVARPTAYRLYLELLRRHGFKLCFQMKAANSNKIRQLIDDNLNLSKIFGFSACEPGVFIVELVLCILWQLVDTALDDESLLELTPEKKAQWPTRPQDISAFEVSFPEQKPEKIEKLQRMNSVITIELIGHLLHNKVITRILSLARENMQTQWGLFTYRLQLLVANSSTLQASTMSLQAFQQLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRRGETDLSSHWKQKTASDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINETGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVRVLVSSPASSLAELEKLFEVAVNGSDDDKVSAATVLCGATLLRGWNFQEHTVRLVVKLLSHSDPADYAGRESQLIKHGPMLNVILTGISPVDYAPIFSFHGLVPELATVLMAICEVYGCLSPSVSWTLGAGEEISAHTVFSNAFILLLRLWKFNHPPLEYCIMGDGAPVGSQLTPEYLLLLRNSQVLTASSSSKSRSSQKQLPVTSSRSSQNPIFMDSFPKLKLWYRQHQACLASTLSGLAHGTPVHNIVDSLLNLMFTKANKGSTSIGSVSGSSSISNSSGPGGDDSHLWPQLPAWEILEAVPFVVDAALTACSHGRLFPRELATGLKDLADFLPASTATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSMVEEHIKKIVAATGIDVPRLATGGTTLGRLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMAIVAALWTQKVKRWSDFLVFSASRTVFYHNNDAVVQLLRSCFTSILGMSSTSLCCCGGVASLLGHGFGSHCSGGLSPVAPGILYLRIFRCIKDCSILAEDILSLLMLSVKDIAETTVSRHGSDKLKRTKYAMGHGQISLATAMTQVKVAASLGATLVWLSGGTTLVQSLFQEILPSWFLSVQDLDRGGDSGGMVYRLGGHALAYFAVYAGMFAWGIDPTAVSRRRERVMGLHLEFLASALDGKISLGCNMFLWRAYVSGFLELVVDRVHCLLHEVDLKVLKKLSIGLRQWKEKELAVAILCRGGPEAMGVAAELILDSEW
Length1369
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy0.116
Instability index43.03
Isoelectric point6.87
Molecular weight148901.90
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14856
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.62|      14|      16|    1093|    1108|       1
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 1093- 1107 (25.38/18.05)	SILGMSSTSlCCCGG
 1110- 1123 (29.24/11.88)	SLLGHGFGS.HCSGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.72|      37|      96|    1175|    1215|       2
---------------------------------------------------------------------------
 1175- 1215 (52.72/38.74)	KRTKYAMG.HGQIsLATAMTQvKVaaSLGATL.VW...LSGGTTLV
 1272- 1313 (54.00/27.17)	RRRERVMGlHLEF.LASALDG.KI..SLGCNMfLWrayVSGFLELV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.76|      13|      16|      55|      69|       3
---------------------------------------------------------------------------
   55-   67 (26.92/18.51)	PWVEWAGEYTKAA
   73-   85 (24.84/ 9.70)	PPNEWAARVATAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.20|      15|      89|      40|      54|       4
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   40-   54 (28.10/16.52)	ARVRGPPFNMASLSS
  131-  145 (24.10/13.05)	ARLASPALLLAILSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.02|      30|     368|     560|     629|       6
---------------------------------------------------------------------------
  591-  629 (45.11/77.71)	AFMKGTPLTqslvrvlvsSPASSLAELEKLFE..VAVNGSD
  961-  992 (48.92/13.62)	AFMNGTDWP.........SPAANLSMVEEHIKkiVAATGID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.28|      27|     630|      96|     122|       7
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   96-  122 (46.46/25.45)	FS.AGLAEMLARVLLS.GQI.SSAAPTAAW
  700-  729 (37.82/19.40)	FSfHGLVPELATVLMAiCEVyGCLSPSVSW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.53|      30|     584|     751|     782|       9
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  751-  782 (52.70/36.26)	LRLWKfnHPPLEYCIMGDGAPVGSQLTPEYLL
 1336- 1365 (51.83/29.26)	LRQWK..EKELAVAILCRGGPEAMGVAAELIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.46|      16|      18|     359|     374|      10
---------------------------------------------------------------------------
  359-  374 (30.64/17.54)	PLSSPNGHCLGGSYSA
  378-  393 (27.82/15.26)	PIDMYLEDCLDGSIAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     120.74|      41|     342|     503|     549|      16
---------------------------------------------------------------------------
  503-  529 (35.68/13.76)	....................................................................................................................................................................................................................................................................................................................................ESLLVPPPCIISAANQAASKAAM....LVSG
  530-  549 ( 5.08/ 7.57)	INSSSGymesinETGNMRHL...............................................................................................................................................................................................................................................................................................................................................
  854-  876 (25.26/ 7.39)	....................ivescisrnlldtsayywpgyinghvnsmshaipsqlagwaafmkgtpltqslvrvlvsspasslaeleklfevavngsdddkvsaatvlcgatllrgwnfqehtvrlvvkllshsdpadyagresqlikhgpmlnviltgispvdyapifsfhglvpelatvlmaicevygclspsvswtlgageeisahtvfsnafilllrlwkfnhppleycimgdgapvgsqltpeyllllrnsqvltassssksrssqkqlpvtssrssqnpifmdsfpklklwyrqhqaclastlsglahgtpvhnivDSLL...NLMFTKANKGSTSIGS.....VSG
  880-  930 (54.71/26.87)	ISNSSG......PGGDDSHL.........................................................................................................................................................................................................................................................................................................wpqlpawE.ILEAVPFVVDAALTACSHGRLfpreLATG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.58|      17|      18|    1125|    1142|      20
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 1125- 1142 (27.39/21.07)	SPVAPGILYLRIFrCIKD
 1144- 1160 (27.19/15.64)	SILAEDILSLLML.SVKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14856 with Med33 domain of Kingdom Viridiplantae
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