<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14854

Description Uncharacterized protein
SequenceFCRIRQLIDDNLNLSKIFGFSACEPGVFIVELVLCILWQLVDTALDDESLLELTPEKKAQWPTRPQDISAFEVSFPEQKPEKIEKLQRMNSVITIELIGHLLHNKVITRILSLARENMQTQWGLFTYRLQLLVANSSTLQASTMSLQAFQQLILDDHNVHGENKHSLHKKFHPMVASNPLSSPNGHCLGGSYSALWIPIDMYLEDCLDGSIAATNSIEILSGLVKALQAVNRSSWHDAFMALWIASVRLVQREREPIEGPVPHLETRLCMLLSIATLAVADIIEEADSRRGETDLSSHWKQKTASDDLRKELMLSLQALGDYESLLVPPPCIISAANQAASKAAMLVSGINSSSGYMESINETGNMRHLIVESCISRNLLDTSAYYWPGYINGHVNSMSHAIPSQLAGWAAFMKGTPLTQSLVRVLVSSPASRCALLLKGKETNIMFHAFGIGIFHKRCHQSSISK
Length466
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.001
Instability index49.77
Isoelectric point6.29
Molecular weight51781.12
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14854
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.46|      16|      18|     179|     194|       1
---------------------------------------------------------------------------
  179-  194 (30.64/23.16)	PLSSPNGHCLGGSYSA
  198-  213 (27.82/20.28)	PIDMYLEDCLDGSIAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.91|      30|      54|     348|     377|       2
---------------------------------------------------------------------------
  348-  377 (53.30/40.55)	SG.INSSS...........GYMESINETGNMRHLIVESCISR
  392-  433 (35.61/24.55)	NGhVNSMShaipsqlagwaAFMKGTPLTQSLVRVLVSSPASR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.83|      14|      19|      47|      60|       3
---------------------------------------------------------------------------
   47-   60 (23.26/14.97)	DESLLELT.PEKKAQ
   67-   81 (20.57/12.49)	DISAFEVSfPEQKPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14854 with Med33 domain of Kingdom Viridiplantae
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