<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14845

Description Uncharacterized protein
SequenceMVMGFPWGTNVYYLLMQLDDNLMPVFYLLEVHTDGEDRSNIDTTTDAKEVVRFNRIDIGQMQLGEDECSANLLDVEKLQVLQSKLNQQSMEDRSPRQSGIDESLPLKHSFSSVVNTVLGYEQDSPSKENRLPYSSPSIHLSPQEVGHQGDSSRAGPPELDDDLLRSNTDTAKLASGVTLDSYLLSNSKSAFSTDTTSSDPAGLENISTLRSEVPSRKRYLSEFLLNIPSLQRSIIDGGPRKRRKLLEDASNVQSRTTLTYGTILKEGNCCITENIYASVLLQVIKHCSLCIKYAQLTTQMNSLDIPYVEEVGLGTPSSSLWLRLPFAQDGSWKHTCLRLGKAGSMSWSVRINDPYYGALWKLHGGSNTTEWGSVRIANTCEMDSHIYFDYDGIILTYNSVEADSIQRLVLELRRLLNARVFACGMRRLIRVNVDEKLVENQVARRAKLHSARKGFRNRLSDQTAKTFRINAVGLMNLWFSYGANAMTMVHFVVEWEADKVGCTMRISPDHLWPHTKFLEDFVNCNEVASFLDCIRLTTGPLLSLGGAIRPSKMPTVSGSAQKQNNVLLANGSSPTTVHINSHDAQTSSMLSAVGRTGPGLVPSSLMPFDVSVVLRGPYWIRIIYRNKFSVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQGLNTLEPSFLSARHTSPNTSSGSQHVVTAANRSSGGPPGEIKLTSGVGCQIAASVSRASNAILPSGFASRTDGAPAHLSLDTNLPVHMKGELNTAFIGLGDDGGYGGGWVPHAALKKVLRGILKYLGVLWLFAQFRDILKDILGSVLKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLHLQVLNVKRFHHQQQQQQVPQSSAQGELTPSEIHEICDYFSRCVACEPYDASRIASFIMLLTLPILVIQEFVKLIAWNKSLSEAHGDIATAERARAELCLEKHPRSVSDDYTEPSLLSKSNIQHDRANNSVDFTLTFVLDHNLTPHVRTSGGAAWLPFCVSLRLRYTFGDTSHVTYLAMDGSHGGRSCWLQHVDWERCKQSVVKAVNTVNGSPIAGDTAQGRLQMVTEMVQKQLQLCLVYLRDGSLSAGSTRP
Length1108
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.211
Instability index48.80
Isoelectric point7.04
Molecular weight122287.60
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14845
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.31|      37|      59|     855|     892|       6
---------------------------------------------------------------------------
  855-  892 (61.18/36.85)	LHLQVLNVKRFHHQQQQQQvPQSSAQGELTPSE..IHEIC
  916-  954 (56.14/29.86)	LTLPILVIQEFVKLIAWNK.SLSEAHGDIATAEraRAELC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.60|      14|      24|     340|     353|       7
---------------------------------------------------------------------------
  340-  353 (26.71/16.94)	GKAGSMSW.SVRIND
  364-  378 (21.89/12.52)	GGSNTTEWgSVRIAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.93|      31|     733|       4|      35|       8
---------------------------------------------------------------------------
    4-   35 (56.36/40.32)	GFPWGTNVYYLLMQLDDNLmPVFYLLEVHT.......DG
  739-  776 (50.57/30.89)	GFASRTDGAPAHLSLDTNL.PVHMKGELNTafiglgdDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.79|      15|      16|     296|     310|       9
---------------------------------------------------------------------------
  296-  310 (26.31/15.75)	LTTQMNS..LDIPYVEE
  313-  329 (21.48/11.53)	LGTPSSSlwLRLPFAQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.28|      23|     552|     143|     177|      10
---------------------------------------------------------------------------
  143-  177 (34.50/41.09)	QEVGHQGDSSRAGPP.ELdddllrsntdtaKLASGV
  697-  720 (37.78/20.73)	QHVVTAANRSSGGPPgEI............KLTSGV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14845 with Med14 domain of Kingdom Viridiplantae
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