<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14836

Description Uncharacterized protein
SequenceAKLASFFQPKHTPDAPAAQRFIAILEEDAFRGTNNKVEYLKKISDKVITMLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSNMHIQVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKACEPEPMTPPVQQIPGPQQSSLLCQNSQIPATMGSAREYDLKEEIFCKIKSWKDAYFPQFLELDRRIVLPELTEEQFSSLPEAKANQYKRKADFKKSIRRILNLMLLQKSDVHEGLKVDLPKYEKHIHHFLVLLEKNKTCHAEMNTGNQLQNCDEQPKSINLTSNASSISGGKREQKQPADASILQSGQTSMARAPLPHQQSNVNHLLGIPSPSFSSPGSLQSWSSSMLESMSPSPVANPAVAPASSCAPAPMISMDVDSITAFLMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAIRSSSPEGLRKSVNSIWSVLGISDIVPPGKIGTVMDCKSSLLQPGGSNTVNKMKRVFNPVVSRSESLLMGSMDGSYMSFECEALDSGLSSEVNIKRQKTQNANKALLEEIKSINNMLIDTVVSISDYCGVDGISPCNGGTTVKLSYSAVSLSPTTKSLFATSETSLILPVKLFVPADYPSSSPVLIHDEGDGARRKNSSAISASADVAFRHALDGLPEPRSIEAIARAWDACVRKAVIQFARRQGGGTISSMFGGWERCAAA
Length860
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.465
Instability index67.62
Isoelectric point8.89
Molecular weight93727.29
Publications
PubMed=23075845

Function

Annotated function 
	RuleBase:RU364150
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP14836
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     329.27|      80|     136|     273|     354|       1
---------------------------------------------------------------------------
   86-  143 (92.14/50.40)	..PEAV...VLASPGPTSQSMTPQTPGLVPNQHILHPYTSNMHIQVEQKYPV.........LDH..RPNFQPMG........
  182-  239 (95.21/43.84)	CTPTSVSKPFIR.PNSQQNHLLGQN.......................DSAIGVRQPQMTRLDEilRANQQEMGTQSYQMLG
  275-  354 (141.91/79.71)	CEPEPMTPPVQQIPGPQQSSLLCQNSQIPATMGSAREYDLKEEIFCKIKSWKDAYFPQFLELDR..RIVLPELTEEQFSSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     505.77|     132|     136|     403|     537|       2
---------------------------------------------------------------------------
  405-  537 (217.98/104.95)	VLLEKNKTCHAEMNTGNQLQNCDE.QPKS.INLTSNAS.SISGGKR..EQKQPADASILQSGQTSMARAPLPHQQSNVNHLLGIPS..PSFSSPGSLQSWSSSMLESMSPSP................V..ANPAVAPASSCAPAPMI.SMDvDSITAF
  539-  677 (173.33/75.93)	MHGNAAAAPPPKANGSNQATPAELiTPASpLQAAGHGEfQVRGGDRtpETEKPID.RLIDAIRSSSPEG.LRKSVNSIWSVLGISDivPP.GKIGTVMDCKSSLLQPGGSNT................VnkMKRVFNPVVSRSESLLMgSMD.GSYMSF
  679-  786 (114.46/48.86)	.....................CE........ALDSGLS.SEVNIKR..QKTQNANKALLE..EIKSINNMLIDTVVSISDYCGVDG..ISPCNGGTTVKLSYSAV.SLSPTTkslfatsetslilpvkL..FVPADYPSSS....PVL.IHD.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.60|      15|      88|     159|     173|       3
---------------------------------------------------------------------------
  159-  173 (29.08/14.59)	QPGTSQSQ.SQYMARQ
  249-  264 (24.52/11.26)	QPGQLRRQnNQQDARQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14836 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EMNTGNQLQNCDEQPKSINLTSNASSISGGKREQKQPADASILQSGQTSMARAPLPHQQSNVNHLLGIPS
2) GSLQSWSSSMLESMSPSPVANPAVAPASSCAP
3) KSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSN
4) LMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAIRS
5) QVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKAC
416
492
54
538
125
485
523
121
601
275










Molecular Recognition Features






MoRF SequenceStartStop




NANANA