<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14833

Description Uncharacterized protein
SequencePAKLASFFQPKHTPDAPAAQRFIAILEEDAFRGTNNKVEYLKKISDKVITMLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSNMHIQVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKACEPEPMTPPVQQIPGPQQSSLLCQNSQIPATMGSAREYDLKEEIFCKIKSWKDAYFPQFLELDRRIVLPELTEEQFSSLPEAKANQYKRKADFKKSIRRILNLMLLQKSDVHEGLKVDLPKYEKHIHHFLVLLEKNKTCHAEMNTGNQLQNCDEQPKSINLTSNASSISGGKREQKQPADASILQSGQTRSLQSWSSSMLESMSPSPVANPAVAPASSCAPAPMISMDVDSITAFLMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAIRSSSPEGLRKSVNSIWSVLGISDIVPPGKIGTVMDCKSSLLQPGGSNTVNKMKRVFNPVVSRSESLLMGSMDGSYMSFECEALDSGLSSEVNIKRQKTQNANKALLEEIKSINNMLIDTVVSISDYCGVDGISPCNGGTTVKLSYSAVSLSPTTKSLFATSETSLILPVKLFVPADYPSSSPVLIHDEGDGVPRKNSSAISASADVAFRHALDGLPEPRSIEAIARAWDACVRKAVIQFARRQGGGTISSMFGGWERCAAA
Length833
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.468
Instability index66.82
Isoelectric point8.84
Molecular weight90940.22
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14833
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.71|      21|      37|     480|     514|       1
---------------------------------------------------------------------------
  480-  500 (39.74/39.95)	PSPVANPAVAPASSCA.PAPMI
  515-  536 (32.97/ 8.96)	NAAAAPPPKANGSNQAtPAELI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.88|      23|      37|     198|     228|       2
---------------------------------------------------------------------------
  193-  215 (40.97/19.61)	IRPNSQQ.....NHLLGQNDSAIGVRQP
  224-  251 (32.90/29.76)	LRANQQEmgtqsYQMLGAQQAEVSKMQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.71|      34|      37|     550|     585|       3
---------------------------------------------------------------------------
  550-  585 (49.35/39.72)	FQVRG.GDRTPETeKpIDRLIDAIRSSSPEGLRKSVN
  588-  622 (57.36/35.89)	WSVLGiSDIVPPG.K.IGTVMDCKSSLLQPGGSNTVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.04|      27|      37|     126|     157|       4
---------------------------------------------------------------------------
  126-  157 (40.51/32.04)	QVEQKYPVLDHRP.NFqpmgITTAGSGVqSRPW
  165-  192 (45.53/22.18)	QSQSQYMARQLQPtNF....VSCTPTSV.SKPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.88|      36|     192|      70|     105|       5
---------------------------------------------------------------------------
   70-  105 (65.02/36.34)	KQPNEAQA.....LHGGNSSVMPEAV...VLASPGPTSQSMTPQ
  256-  299 (56.86/30.83)	RQNNQQDArqtglLYSPFKACEPEPMtppVQQIPGPQQSSLLCQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.74|      25|      33|     314|     346|       6
---------------------------------------------------------------------------
  317-  341 (45.81/40.19)	EEIFCKIKSWKDAYFPQ...FLELDRRI
  348-  375 (36.93/13.36)	EEQFSSLPEAKANQYKRkadFKKSIRRI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.37|      19|      33|     424|     444|       7
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  424-  444 (26.76/19.04)	LQNcdEQPKSINLTSNA..SSIS
  459-  479 (28.60/13.35)	LQS..GQTRSLQSWSSSmlESMS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14833 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAIRS
2) MLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSN
3) MNTGNQLQNCDEQPKSINLTSNASSISGGKREQKQPADASILQSGQ
4) QVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKAC
511
51
418
126
574
122
463
276










Molecular Recognition Features






MoRF SequenceStartStop




NANANA