<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14832

Description Uncharacterized protein
SequencePDAPAAQRFIAILEEDAFRGTNNKVEYLKKISDKVITMLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSNMHIQVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKACEPEPMTPPVQQIPGPQQSSLLCQNSDVSATMGSAREYDLKEEIFCKIKSWKDAYFPQFLELDRRIVLPELTEEQFSSLPEAKANQYKRKADFKKSIRRILNLMLLQKSDVHEGLKVDLPKYEKHIHHFLVLLEKNKTCHAEMNTGNQLQNCDEQPKSINLTSNASSISGGCSREQKQPADASILQSGQTSMARAPLPHQQSNVNHLLGIPSPSFSSPGSLQSWSSSMLESMSPSPVANPAVAPASSCAPAPMISMDVDSITAFLMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAIRSSSPEGLRKSVNSIWSVLGISDIVPPGKIGTVMDCKSSLLQPGGSNTVNKMKRVFNPVVSRSESLLMGSMDGSYMSFECEALDSGLSSEVNIKRQKTQNANKALLEEIKSINNMLIDTVVSISDYCGVDGISPCNGGTTVKLSYSAVSLSPTTKSLFATSETVSYLAREAIRPSRLSEQLSGAHP
Length774
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.511
Instability index66.66
Isoelectric point8.59
Molecular weight84510.76
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14832
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.33|      35|      37|     441|     475|       1
---------------------------------------------------------------------------
   74-  105 (45.27/24.31)	P.EAVVLASpGPTSQ..........SMTPqTPGLVPN.......QHIL....HP
  148-  191 (29.50/12.91)	PGT...SQS.QSQYMarqlqptnfvSCTP.TSVSKPFIrpnsqqNHLLG.....
  441-  475 (63.09/37.17)	PADASILQS.GQTSM..........ARAP.LPHQQSNV......NHLLGI.PSP
  480-  514 (48.47/26.61)	PGS...LQS.WSSSM........leSMSP.SPVANPAV......APASSCaPAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.91|      11|      88|     121|     131|       2
---------------------------------------------------------------------------
  121-  131 (24.33/15.96)	LDH..RPNFQPMG
  207-  219 (16.57/ 8.39)	LDEilRANQQEMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.96|      28|      31|     301|     328|       4
---------------------------------------------------------------------------
  301-  328 (50.51/36.88)	DLKEEIFCKIKSWKDAYFPQ...FLELDRRI
  332-  362 (41.45/28.95)	ELTEEQFSSLPEAKANQYKRkadFKKSIRRI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14832 with Med15 domain of Kingdom Viridiplantae
Unable to open file!