<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14831

Description Uncharacterized protein
SequenceRPAKLASFFQPKHTPDAPAAQRFIAILEEDAFRGTNNKVEYLKKISDKVITMLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSNMHIQVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKACEPEPMTPPVQQIPGPQQSSLLCQNSQIPATMGSAREYDLKEEIFCKIKSWKDAYFPQFLELDRRIVLPELTEEQFSSLPEAKANQYKRKADFKKSIRRILNLMLLQKSDVHEGLKVDLPKYEKHIHHFLVLLEKNKTCHAEMNTGNQLQNCDEQPKSINLTSNASSISGGKSREQKQPADASILQSGQTSMARAPLPHQQSNVNHLLGIPSPSFSSPGSLQSWSSSMLESMSPSPVANPAVAPASSCAPAPMISMDVDSITAFLMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAIRSSSPEGLRKSVNSIWSVLGISDIVPPGKIGTVMDCKSSLLQPGGSNTVNKMKRVFNPVVSRSESLLMGSMDGSYMSFECEALDSGLSSEVNIKRQKTQNANKALLEEIKSINNMLIDTVVSISDYCGVDGISPCNGGTTVKLSYSAVSLSPTTKSLFATSETSLILPVKLFVPADYPSSSPVLIHDEGDGVPRKNSSAISASADVAFRHALDGLPEPRSIEAIARAWDACVRKAVIQFARRQGGGTISSMFGGWERCAAA
Length863
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.465
Instability index67.29
Isoelectric point8.89
Molecular weight94036.65
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14831
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     190.60|      35|      37|     455|     489|       1
---------------------------------------------------------------------------
   88-  119 (44.30/20.98)	P.EAVVLASpGPTSQ..SMTPqTPGL................VPN.QHIL....HP
  162-  205 (32.76/13.46)	PGTS...QS.QSQYM..ARQL.QPTNfvsctptsvskpfirpNSQQNHLLG.....
  455-  489 (64.46/34.12)	PADASILQS.GQTSM..ARAP.LPHQ................QSNVNHLLGI.PSP
  494-  528 (49.09/24.11)	PGS...LQS.WSSSMleSMSP.SPVA................NPAVAPASSCaPAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.78|      52|     205|     562|     618|       3
---------------------------------------------------------------------------
  562-  618 (86.00/58.92)	PAELITPAS.PLQAA..GHGEfqvrgGDRTP.ETEKPIDRLIDAIRSSSPEGL..RKSVNSI...W
  770-  830 (68.78/37.41)	PVKLFVPADyPSSSPvlIHDE.....GDGVPrKNSSAISASADVAFRHALDGLpePRSIEAIaraW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.18|      20|      93|     346|     365|       5
---------------------------------------------------------------------------
  315-  334 (36.50/26.53)	DLKEEIFCKIKSWKDAYFPQ
  346-  365 (32.67/22.93)	ELTEEQFSSLPEAKANQYKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.04|      23|      39|     633|     656|      10
---------------------------------------------------------------------------
  633-  656 (38.03/29.20)	GTVMDCKSSLLQPGGSNTVNkMKR
  675-  697 (41.01/26.71)	GSYMSFECEALDSGLSSEVN.IKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14831 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EMNTGNQLQNCDEQPKSINLTSNASSISGGKSREQKQPADASILQSGQTSMARAPLPHQQSNVNHLLGIPS
2) GSLQSWSSSMLESMSPSPVANPAVAPASSCAP
3) LMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAIRS
4) MLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSN
5) QVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKAC
418
495
541
52
127
488
526
604
123
277










Molecular Recognition Features






MoRF SequenceStartStop




1) FIAIL
23
27