<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14830

Description Uncharacterized protein
SequenceQRFIAILEEDAFRGTNNKVEYLKKISDKVITMLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSNMHIQVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKACEPEPMTPPVQQIPGPQQSSLLCQNSQIPATMGSAREYDLKEEIFCKIKSWKDAYFPQFLELDRRIVLPELTEEQFSSLPEAKANQYKRKADFKKSIRRILNLMLLQKSDVHEGLKVDLPKYEKHIHHFLVLLEKNKTCHAEMNTGNQLQNCDEQPKSINLTSNASSISGGKRAESKSNLQMQAFCSQGKQVWLEHHYLINRAMSTTC
Length464
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.747
Instability index66.09
Isoelectric point9.30
Molecular weight52597.21
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14830
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.88|      23|      37|     179|     209|       1
---------------------------------------------------------------------------
  174-  196 (40.97/15.14)	IRPNSQQ.....NHLLGQNDSAIGVRQP
  205-  232 (32.90/23.00)	LRANQQEmgtqsYQMLGAQQAEVSKMQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.04|      27|      37|     107|     138|       2
---------------------------------------------------------------------------
  107-  138 (40.51/41.12)	QVEQKYPVLDHRP.NFqpmgITTAGSGVqSRPW
  146-  173 (45.53/28.59)	QSQSQYMARQLQPtNF....VSCTPTSV.SKPF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.51|      45|     356|      21|      66|       3
---------------------------------------------------------------------------
   21-   66 (70.03/40.50)	YLKKISDKVITMLRNKS..DELQRRAQLRSQLKQPNEAQaLHGGNSSV
  378-  424 (72.49/38.39)	YEKHIHHFLVLLEKNKTchAEMNTGNQLQNCDEQPKSIN.LTSNASSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.81|      19|     191|      68|      86|       4
---------------------------------------------------------------------------
   68-   86 (35.29/20.28)	PEAV...VLASPGPTSQSMTPQ
  259-  280 (32.52/18.09)	PEPMtppVQQIPGPQQSSLLCQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.69|      16|      31|     320|     337|       6
---------------------------------------------------------------------------
  320-  337 (22.33/23.53)	RRIVlpELTEEQFSSLPE
  354-  369 (27.36/19.63)	RRIL..NLMLLQKSDVHE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14830 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSN
2) QVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKAC
36
107
103
257










Molecular Recognition Features






MoRF SequenceStartStop




NANANA