<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14828

Description Uncharacterized protein
SequencePDAPAAQRFIAILEEDAFRGTNNKVEYLKKISDKVITMLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSNMHIQVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKACEPEPMTPPVQQIPGPQQSSLLCQNSDVSATMGSAREYDLKEEIFCKIKSWKDAYFPQFLELDRRIVLPELTEEQFSSLPEAKANQYKRKADFKKSIRRILNLMLLQKSDVHEGLKVDLPKYEKHIHHFLVLLEKNKTCHAEMNTGNQLQNCDEQPKSINLTSNASSISGGCSREQKQPADASILQSGQTSMARAPLPHQQSNVNHLLGIPSPSFSSPGSLQSWSSSMLESMSPSPVANPAVAPASSCAPAPMISMDVDSITAFLMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAVSIRSSSPEGLRKSVNSIWSVLGISDIVPPGKIGTVMDCKSSLLQPGGSNTVNKMKRVFNPVVSRSESLLMGSMDGSYMSFECEALDSGLSSEVNIKRQKTQNANKALLEEIKSINNMLIDTVVSISDYCGVDGISPCNGGTTVKLSYSAVSLSPTTKSLFATSETVSYLAREAIRPSRLSEQLSGAHP
Length776
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.505
Instability index66.52
Isoelectric point8.59
Molecular weight84696.97
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14828
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.88|      32|      37|     441|     475|       1
---------------------------------------------------------------------------
  148-  191 (30.97/ 9.60)	PGT...SQSQSQYMarqlqptnfvSCTPTSVSKPFIrpnsqqNHLLG.....
  441-  475 (53.30/25.61)	PADasiLQSGQTSM..........ARAPLPHQQSNV......NHLLGI.PSP
  480-  514 (50.61/19.43)	PGS...LQSWSSSM........leSMSPSPVANPAV......APASSCaPAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.24|      30|      37|     568|     603|       2
---------------------------------------------------------------------------
  568-  603 (35.17/42.31)	VRG.GDRTPETeKpIDRLIDAvsiRSS..SPEGlRKSVN
  608-  640 (47.07/28.98)	VLGiSDIVPPG.K.IGTVMDC...KSSllQPGG.SNTVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.84|      15|      37|     201|     215|       3
---------------------------------------------------------------------------
  201-  215 (27.33/20.18)	QP.QMTRLDEILRANQ
  237-  252 (22.50/15.11)	QPgQLRRQNNQQDARQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.76|      14|      30|     301|     314|       6
---------------------------------------------------------------------------
  301-  314 (25.74/17.15)	DLKEEIFCKIKSWK
  332-  345 (23.03/14.61)	ELTEEQFSSLPEAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.81|      19|     193|      74|      92|       7
---------------------------------------------------------------------------
   74-   92 (35.29/14.67)	PEAV...VLASPGPTSQSMTPQ
  265-  286 (32.52/13.04)	PEPMtppVQQIPGPQQSSLLCQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.93|      12|      31|     355|     366|       9
---------------------------------------------------------------------------
  355-  366 (20.12/13.88)	FKKSIRRILNLM
  384-  395 (21.81/15.59)	YEKHIHHFLVLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14828 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LMHGNAAAAPPPKANGSNQATPAELITPASPLQAAGHGEFQVRGGDRTPETEKPIDRLIDAV
2) MLRNKSDELQRRAQLRSQLKQPNEAQALHGGNSSVMPEAVVLASPGPTSQSMTPQTPGLVPNQHILHPYTSN
3) QVEQKYPVLDHRPNFQPMGITTAGSGVQSRPWPRQPGTSQSQSQYMARQLQPTNFVSCTPTSVSKPFIRPNSQQNHLLGQNDSAIGVRQPQMTRLDEILRANQQEMGTQSYQMLGAQQAEVSKMQPGQLRRQNNQQDARQTGLLYSPFKAC
4) SNASSISGGCSREQKQPADASILQSGQTSMARAPLPHQQSNVNHLLGIPS
527
38
113
425
588
109
263
474










Molecular Recognition Features






MoRF SequenceStartStop




1) RFIAIL
8
13