<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14821

Description Uncharacterized protein
SequenceKILITTISYALLHSHHLPCSSSQRKMRNYLVSMSPKQLLLTSSVAFCVSSDWKILVDEWVSTTNVALADNSPGTSNPSVVDDDEEEEGLPSPPLDEGAFFAPETTAIQLSAFFDEMDEDGNLRHNNDGRLGNKRENNGRRPPNYSTVSKPELTRPVGTVERDQFRRPELTRQEPPMRHTNQQRPQGSNLQAKPHVMLNKQSRPPSSDSGSIMRPMKAATQQKPIGEMKYKQTQEHFGVERKPAMGHVDKSRLRAQPSAGVRLESAKPKTQDGLESNGRLEAAKRRLQERYQEAENAKKQRTIQVMELGDIPKPKSHTKQPMAKSRNNIRSRVLGRR
Length336
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.04
Grand average of hydropathy-0.983
Instability index59.85
Isoelectric point9.75
Molecular weight37874.28
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14821
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     130.86|      21|      61|     189|     209|       1
---------------------------------------------------------------------------
  146-  162 (18.58/ 7.28)	TVSKP.EL.....T.......RPVGTvERD
  163-  180 (27.80/14.58)	QFRRP.E..LTRQ........EPPMR.HTN
  189-  209 (36.08/21.12)	LQAKP.HVMLNKQS.......RPPSS.DSG
  219-  245 (21.11/ 9.28)	TQQKPiGEMKYKQTqehfgveRKPA...MG
  252-  272 (27.29/14.17)	LRAQP.SAGVRLES.......AKPKT.QDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.27|      10|      28|      19|      31|       2
---------------------------------------------------------------------------
   19-   31 (14.09/17.88)	CSSSQRKMrnyLV
   47-   56 (20.18/12.71)	CVSSDWKI...LV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.47|      18|      30|      72|      89|       3
---------------------------------------------------------------------------
   72-   89 (31.14/21.56)	PGTSN...PSVVDDDEEEEGL
  102-  122 (26.33/17.15)	PETTAiqlSAFFDEMDEDGNL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14821 with Med26 domain of Kingdom Viridiplantae
Unable to open file!