<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14818

Description Mediator of RNA polymerase II transcription subunit 31
SequenceKPIYKPQVRYAPSLPQKEYCLPKKTRKNSLLAGQSSSPSPYPSRRRRRRPAGSMDAMEEDTPPAPPLPPPPTRGAKQPPYKDPDDGRQRFLLELEFIQCLANPIYINYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYIMYPHCLFFLELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHILPRPPPEPTPAPAPAPVPTPPPVPAAPSSLPTMSAVGASAMPPMQFIGTPGTNNPKNDMRNVMGGRKRKMG
Length259
PositionMiddle
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.11
Grand average of hydropathy-0.807
Instability index74.86
Isoelectric point9.98
Molecular weight29630.95
Publications
PubMed=23075845

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364129
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP14818
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.68|      26|      58|      90|     115|       4
---------------------------------------------------------------------------
   90-  115 (47.55/29.89)	FLLEL....EFIQCLANPIYINYLAQNRYF
  146-  175 (42.13/25.77)	FFLELlqnaNFRNAMAHPASKEVAHRQQYF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.19|      20|     151|      23|      42|       5
---------------------------------------------------------------------------
   23-   42 (36.12/14.76)	KKTRKNSL...LAGQSSSPSPYP
  178-  200 (35.07/14.13)	KNYRNNRLkhiLPRPPPEPTPAP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14818 with Med31 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HILPRPPPEPTPAPAPAPVPTPPPVPAAPSSLPT
2) LPKKTRKNSLLAGQSSSPSPYPSRRRRRRPAGSMDAMEEDTPPAPPLPPPPTRGAKQPPYKDPD
3) MPPMQFIGTPGTNNPKNDMRNVMGGRKRKMG
187
21
229
220
84
259










Molecular Recognition Features






MoRF SequenceStartStop




1) KNYRNNRL
2) KPIYKPQVRYAPSLPQKEYCLPKKTRKNSLLAGQSS
3) PSPYPSRRRRRR
178
1
38
185
36
49