<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14811

Description Uncharacterized protein
SequenceMEPVWETASARSDTAAATEEEEAGGVEETVKVFVAVPEQHKNGQLTLAWALRNLPDVAPTAADVEVVVAHVHVPAKMIPVMGSKFHASKLSSELVRSYRNRERVKADKHLDEYIRQCSKMKIKCQKLFIESEDVVKGIMELVSLHGASKLVMGAAADKHFPRNPRRMLVPRSKTALDVMGRAHPSCKIWFVCREHLISISEDGALRSPILTPAVVPARRSPIPASSIVAARRNRYASSNNAVDGLIQRSMSEKVAPLWLPCRSAIRRTLRILSMEHVSVGSWDSVPTESVPSSCREEASSDSSSSFELPIDDVFTIHEKTAPCHDDQPKKTEDVPKQEEDIAKAKEDIPLSMEEVEALKRERDDAVRNLSEANQAKAELEQRVVDLKERTSLLDSQLKLSEETRTMGPGLDFAWCSEFSLSELRQATRNFSEATKVGEGVYRGVLRNTTVAIKMLHSHSSSQFQQEVGVVSRVRHPNLVTLMGCCPEASALVFEFLPNGSLEDRLARRDHTPPLAWQARTRIIGEVCSALVFLHSCEPRPVTHGDLSPSNILLDANLVSKLGDYGASSLPTMTNPGSSPYTDPELLISGELTPGSDVYSFGVVVLRLVTGHPALGIASKVEEALEKGEMEALVDRSAGEWPFPQAEKLMLLGLQCAELSSRRRPARMSQVWRVVEPLAKAASMPAAPESLVRSFGESHMPSCFICPISQEVMRNPHTAADGYTYEAEAIKGWLDSGHETSPMTKLPLVHRHVTPSYALRSVIQDYMQQHQQQLPPGSDRST
Length781
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.05
Grand average of hydropathy-0.318
Instability index56.96
Isoelectric point6.18
Molecular weight86157.23
Publications
PubMed=23075845

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14811
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.59|      29|      68|     165|     193|       1
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  165-  193 (56.36/33.81)	RRMLVP.............RSKTALDVMGRAHPSCKI...WFVCR
  218-  262 (40.23/22.21)	RRSPIPassivaarrnryaSSNNAVDGLIQRSMSEKVaplWLPCR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     428.01|     127|     156|     380|     517|       2
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  300-  353 (52.59/20.93)	....................................................................................SDSSSSFELPI.DDVFTI.HEKT.....A..PCHDDQPKKTEDVPKQ..EEDIAKAKEDIPLSME
  380-  517 (202.97/130.20)	EQRVV...DLKERTSLLDSQL..KLSEETRTMGPGLDFAWCSEFSLSELRqatrnFS.EATKvGEGVYR.GVlrnttVAIKMLHSHSSSQFQQEV.GVVSRVRHPNLV.TLMG..CCPEASALVFEFLPNGSLEDRLARRDHTPPLAWQ
  537-  672 (172.45/92.31)	EPRPVthgDLSPSNILLDANLvsKLGDYGASSLPTMTNPGSSPYTDPELL.....ISgELTP.GSDVYSfGV.....VVLRLVTGHPALGIASKVeEALEKGEMEALVdRSAGewPFPQAEKLMLLGLQCAELSSR..RRPARMSQVWR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14811 with Med32 domain of Kingdom Viridiplantae
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