<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14805

Description Uncharacterized protein
SequenceMASRLPPSERSCSCARSTTKMSSSSSTSTSTTQTCPSISPLITPSMTSMRLSGITERSLTSPLTNTQSNPCSGNCSMASTISIVTGLSIETSSLLIYWVMGEGEEHGIIKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEAKATPNPFQLDQLDKIFKVLGHPTVEKWPTLANLPCWQNDQQHIQGHKYENTGLHTIVHLPQKGPAFDLLSRMLEYDPRKRITAAQALEHEYFRMDPLPGRNALVPSQPGEKIVAYPVRPVDTSTDFEGTTSLQPTQPPSGNGPPGGQPVPRQIPRQMQQPMGGMQRMPPGANMGAFGAAPQAGMVGMNPGNIPMQRGAGGQSHPHQLRRKADQGMQMQNPGYPQQKRRF
Length407
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.409
Instability index43.21
Isoelectric point9.14
Molecular weight44324.29
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14805
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.16|      16|      17|     312|     328|       1
---------------------------------------------------------------------------
  312-  328 (27.34/13.84)	PTQPPSGNGpPGGQPVP
  367-  382 (27.81/ 9.94)	PGNIPMQRG.AGGQSHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.33|      40|      44|       1|      41|       2
---------------------------------------------------------------------------
    1-   41 (66.75/37.85)	MAS.RLPP.SERSCSCARSTTKmSSSSSTSTSTTQTCPSISPL
   46-   87 (61.58/30.72)	MTSmRLSGiTERSLTSPLTNTQ.SNPCSGNCSMASTISIVTGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.87|      16|      16|     240|     255|       6
---------------------------------------------------------------------------
  240-  255 (28.96/16.75)	K..GPAFDLLSRMLEYDP
  257-  274 (23.90/12.82)	KriTAAQALEHEYFRMDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14805 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDPLPGRNALVPSQPGEKIVAYPVRPVDTSTDFEGTTSLQPTQPPSGNGPPGGQPVPRQIPRQMQQPMGGMQRMPPGANMGAFGAAPQAGMVGMNPGNIPMQRGAGGQSHPHQLRRKADQGMQMQNPGYPQQKRRF
272
407










Molecular Recognition Features






MoRF SequenceStartStop




1) QSHPHQLRRKADQGMQMQNPGYPQQKRRF
379
407