<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14804

Description Uncharacterized protein
SequenceMGEGEEHGIIKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEAKATPNPFQLDQLDKIFKVLGHPTVEKWPTLANLPCWQNDQQHIQGHKYENTGLHTIVHLPQKGPAFDLLSRMLEYDPRKRITAAQALEHEYFRMDPLPGRNALVPSQPGEKIVAYPVRPVDTSTDFEGTTSLQPTQPPSGNGPPGGQPVPRQIPRQMQQPMGGMQRMPPGANMGAFGAAPQAGMVGMNPGNIPMQRGAGGQSHPHQLRRKADQGMQMQNPGYPQQKRRF
Length308
PositionKinase
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.527
Instability index33.76
Isoelectric point9.16
Molecular weight33979.63
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14804
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.00|      28|      29|     197|     224|       1
---------------------------------------------------------------------------
  197-  224 (50.51/20.45)	RPVDTSTDFEGTTSLQPTQ..PPSGN.GPPG
  226-  256 (42.50/16.20)	QPVPRQIPRQMQQPMGGMQrmPPGANmGAFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.37|      14|      18|     273|     288|       2
---------------------------------------------------------------------------
  273-  288 (23.91/14.77)	MQRGAGGqsHPHQLRR
  294-  307 (29.47/13.02)	MQMQNPG..YPQQKRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14804 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDPLPGRNALVPSQPGEKIVAYPVRPVDTSTDFEGTTSLQPTQPPSGNGPPGGQPVPRQIPRQMQQPMGGMQRMPPGANMGAFGAAPQAGMVGMNPGNIPMQRGAGGQSHPHQLRRKADQGMQMQNPGYPQQKRRF
173
308










Molecular Recognition Features






MoRF SequenceStartStop




1) QMQNPGYPQQKRRF
2) QSHPHQLRRKADQ
295
280
308
292