<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14801

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPPPNPAPNATPASGNAVAASSPPPLKEQQQQSQDGIVAGGGAGADGGAGGGGGGEAVEAAVTGEAMEVDGGAGGAGDVEGGGGSGAAGGAQLASSPATVFRIRLKQPPASLKHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGVSPYRWLPANSSTSNLKAFEEKFLTQHPQNSGWPNILCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIAPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSELLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQRNPDSAMQKIQHLMNSKIEDSSSAISAVRSGLGAAKVEDGAATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGTSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPHLKIGGHINPHASDMEEEGKTNFGIQSLWPRKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGAANMANEREAWWISRWTQACPMCGGSWVKVV
Length1297
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.181
Instability index51.29
Isoelectric point6.34
Molecular weight138724.25
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14801
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.60|      35|      41|      29|      63|       1
---------------------------------------------------------------------------
   29-   63 (63.63/34.69)	GNAV.AASSPPPLKEQQQQSQDG.IVAGGGAGADGGA
   69-  105 (52.97/27.56)	GEAVeAAVTGEAMEVDGGAGGAGdVEGGGGSGAAGGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     188.86|      46|     114|     920|     965|       2
---------------------------------------------------------------------------
  920-  965 (82.50/58.00)	GAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLI....GDCHFLHRLCQ
  983- 1023 (38.68/22.40)	..ANAQRNPDSAMQK.IQHLMNSKIEDSSSAISAVrsglGAAKV......
 1036- 1077 (67.67/45.94)	GAKGLEENPM.GKSVRIG.SGNAGQGYTSDEVKVL......FLILVDLCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.26|      18|     115|     185|     206|       3
---------------------------------------------------------------------------
  185-  206 (31.61/20.07)	CSVFNvradSPRDFVQFIEWSP
  301-  318 (36.65/15.60)	CSVFS....SGSVQLHWSQWPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.47|      21|     115|     343|     371|       4
---------------------------------------------------------------------------
  343-  370 (27.40/25.62)	AADAIITESGALHvagvPLVNPSTvvvW
  381-  401 (39.07/15.01)	QATAKINATSPLP....PSLNPPS...W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.62|      31|     115|     446|     476|       5
---------------------------------------------------------------------------
  412-  443 (40.47/21.51)	.FSlqDYLVSEAAQTRKQIDNEITEAASIHCCP
  446-  476 (52.51/30.20)	NFS..AYVSPEAAAQSATTTTWGSGVTSVAFDP
  489-  507 (26.64/11.53)	E.G..QYMSPYDPDEGPSITGW...........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.72|      19|     581|     690|     711|      13
---------------------------------------------------------------------------
  690-  711 (36.06/25.01)	ERaiaDRFW...WSL...MAGVDWWDAV
 1273- 1297 (31.66/14.97)	ER...EAWWisrWTQacpMCGGSWVKVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14801 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTSSSPAPNPNPVPTPPPNPAPNATPASGNAVAASSPPPLKEQQQQSQDGIVAGGGAGADGGAGGGGGGEAVEAAVTGEAMEVDGGAGGAGDVEGGGGSGAAGGAQL
2) SSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATG
1
864
107
899










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLK
114
120