<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14799

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPPPNPAPNATPASGNAVAASSPPPLKEQQQQSQDGIVAGGGAGADGGAGGGGGGEAVEAAVTGEAMEVDGGAGGAGDVEGGGGSGAAGGAQLASSPATVFRIRLKQPPASLKHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGVSPYRWLPANSSTSNLKAFEEKFLTQHPQNSAGWPNILCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIAPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRYAAQLIQTD
Length706
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy-0.160
Instability index56.61
Isoelectric point5.67
Molecular weight74504.71
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14799
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.80|      30|      30|      54|      83|       2
---------------------------------------------------------------------------
   53-   82 (53.19/26.06)	AGGGAGADGG.AGGGGGGEAVEAAVTGEAME
   83-  113 (48.61/23.20)	VDGGAGGAGDvEGGGGSGAAGGAQLASSPAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.77|      29|      30|     644|     672|       3
---------------------------------------------------------------------------
  644-  672 (52.63/31.26)	PPAFSSSSCCLAS.VWHDTLKDRTILKIIR
  675-  704 (45.15/25.84)	PPAILNVQTKVSSaVWERAIADRYAAQLIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     239.46|      47|      84|     314|     360|       4
---------------------------------------------------------------------------
  266-  309 (45.81/23.12)	..RWLPANSstsnlkAFEEKFLTQHPQNSAGWPNILCVCSVFS.SGS......
  314-  360 (83.19/48.53)	WSQWPPQNS......AQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGV
  402-  445 (68.30/38.41)	WSGFAP.........LAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPV
  449-  481 (42.16/20.64)	SAYVSPEAA......AQ....SATTTTWGSGVTSV.AFDP..TRGG.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.72|      22|      43|     181|     204|       5
---------------------------------------------------------------------------
  181-  204 (37.60/32.19)	RPTECSVFNVRADSPRDFVQfiEW
  227-  248 (44.12/30.20)	QPTKGPVNLVRDSSSWQCEH..EW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.26|      26|      31|     493|     519|       6
---------------------------------------------------------------------------
  493-  519 (46.83/27.23)	YMSPYD.PDEGPSITGWRVQCwESSLQP
  526-  552 (44.44/20.62)	FGSPSSfGGQPPMQTVWSTRV.NKSIAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.98|      15|      30|     593|     612|       8
---------------------------------------------------------------------------
  593-  612 (18.46/27.17)	PNdvrqLAQiVYSAH...GGEVA
  626-  643 (24.52/15.32)	PN....FDQ.VDSYHvnvGSSIA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14799 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTSSSPAPNPNPVPTPPPNPAPNATPASGNAVAASSPPPLKEQQQQSQDGIVAGGGAGADGGAGGGGGGEAVEAAVTGEAMEVDGGAGGAGDVEGGGGSGAAGGAQL
1
107










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLKQ
114
121