<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14795

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPPPNPAPNATPASLKHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGVSPYRWLPANSSTSNLKAFEEKFLTQHPQNSAGWPNILCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIAPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSELLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQRNPDSAMQKIQHLMNSKIEDSSSAISAVRSGLGAAKVEDGAATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGTSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPHLKIGGHINPHASDMEEEGKTNFGIQSLWPRKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGAANMANER
Length1178
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.185
Instability index50.86
Isoelectric point6.72
Molecular weight127494.08
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14795
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     188.86|      46|     114|     824|     869|       1
---------------------------------------------------------------------------
  824-  869 (82.50/52.16)	GAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLI....GDCHFLHRLCQ
  887-  927 (38.68/20.23)	..ANAQRNPDSAMQK.IQHLMNSKIEDSSSAISAVrsglGAAKV......
  940-  981 (67.67/41.35)	GAKGLEENPM.GKSVRIG.SGNAGQGYTSDEVKVL......FLILVDLCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.24|      18|     114|      88|     109|       2
---------------------------------------------------------------------------
   88-  109 (31.14/26.39)	CSVFNvradSPRDFVQFIEWSP
  205-  222 (38.10/22.08)	CSVFS....SGSVQLHWSQWPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.86|      17|     114|     247|     275|       3
---------------------------------------------------------------------------
  247-  263 (27.97/ 7.80)	AADAIITE...SGALHVAGV
  360-  379 (19.89/13.32)	AAQSATTTtwgSGVTSVAFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.92|      16|      16|     758|     773|       5
---------------------------------------------------------------------------
  758-  773 (24.92/13.64)	RTLASHAVGASSSSGN
  775-  790 (26.00/14.58)	RNMVTSPTNNSPSPSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.49|      36|     430|     265|     301|       6
---------------------------------------------------------------------------
  265-  301 (59.97/41.08)	LVNPSTVV..VWEVMPGLGNGIQATaKINATSPLPPSLN
  696-  733 (58.53/35.57)	LINPSTLLpePWQASSELLSNIEPD.KMTVDPALLPSIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.73|      48|      60|    1009|    1061|       7
---------------------------------------------------------------------------
 1009- 1061 (77.31/54.55)	GTYTVLPEV.VEASLGPHMQNMpRPRGADAAGLllreLELQPPSEEWHRRN.MFG
 1071- 1120 (79.42/43.63)	GPLDNMPHLkIGGHINPHASDM.EEEGKTNFGI....QSLWPRKRRLSERDaAFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.65|      19|     116|     427|     445|       8
---------------------------------------------------------------------------
  396-  411 (27.31/12.32)	..YMSPYD.PDEGPSITGW
  427-  445 (37.75/20.08)	PIFGSPSSFGGQPPMQTVW
  457-  470 (20.60/ 7.34)	EDLKNPQTY...VPMPT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.13|      22|      29|     547|     568|       9
---------------------------------------------------------------------------
  547-  568 (42.69/21.73)	PPAFSSSSCCLAS.VWHDTLKDR
  578-  600 (34.44/16.29)	PPAILNVQTKVSSaVWERAIADR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14795 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATG
768
803










Molecular Recognition Features






MoRF SequenceStartStop




NANANA