<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14795

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPPPNPAPNATPASLKHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGVSPYRWLPANSSTSNLKAFEEKFLTQHPQNSAGWPNILCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIAPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRFWWSLMAGVDWWDAVGCTQSAAEDGIVSLNSVIALLDTDFHCLPTMQQRQQHCPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPSTLLPEPWQASSELLSNIEPDKMTVDPALLPSIQGYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSSSGNSRNMVTSPTNNSPSPSNNQGNQGGVASATGSSQMQEWVQGAIAKISNNADGAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLLFRRRQSPRLLANAQRNPDSAMQKIQHLMNSKIEDSSSAISAVRSGLGAAKVEDGAATRGQLVLGAKGLEENPMGKSVRIGSGNAGQGYTSDEVKVLFLILVDLCRRTSGLQHPLPVSQVGTSNIIIRLHFIDGTYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELQPPSEEWHRRNMFGGPWSEPDDLGPLDNMPHLKIGGHINPHASDMEEEGKTNFGIQSLWPRKRRLSERDAAFGLKTSVGLGAYLGVMGSRRDVITAVWKTGLDGEWYKCIRCLRQTCAFAQPGAANMANER
Length1178
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-0.185
Instability index50.86
Isoelectric point6.72
Molecular weight127494.08
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14795
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     188.86|      46|     114|     824|     869|       1
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  824-  869 (82.50/52.16)	GAANAAPNPVSGRSSFIPISINTGTFPGTPAVRLI....GDCHFLHRLCQ
  887-  927 (38.68/20.23)	..ANAQRNPDSAMQK.IQHLMNSKIEDSSSAISAVrsglGAAKV......
  940-  981 (67.67/41.35)	GAKGLEENPM.GKSVRIG.SGNAGQGYTSDEVKVL......FLILVDLCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.24|      18|     114|      88|     109|       2
---------------------------------------------------------------------------
   88-  109 (31.14/26.39)	CSVFNvradSPRDFVQFIEWSP
  205-  222 (38.10/22.08)	CSVFS....SGSVQLHWSQWPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.86|      17|     114|     247|     275|       3
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  247-  263 (27.97/ 7.80)	AADAIITE...SGALHVAGV
  360-  379 (19.89/13.32)	AAQSATTTtwgSGVTSVAFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.92|      16|      16|     758|     773|       5
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  758-  773 (24.92/13.64)	RTLASHAVGASSSSGN
  775-  790 (26.00/14.58)	RNMVTSPTNNSPSPSN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.49|      36|     430|     265|     301|       6
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  265-  301 (59.97/41.08)	LVNPSTVV..VWEVMPGLGNGIQATaKINATSPLPPSLN
  696-  733 (58.53/35.57)	LINPSTLLpePWQASSELLSNIEPD.KMTVDPALLPSIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.73|      48|      60|    1009|    1061|       7
---------------------------------------------------------------------------
 1009- 1061 (77.31/54.55)	GTYTVLPEV.VEASLGPHMQNMpRPRGADAAGLllreLELQPPSEEWHRRN.MFG
 1071- 1120 (79.42/43.63)	GPLDNMPHLkIGGHINPHASDM.EEEGKTNFGI....QSLWPRKRRLSERDaAFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.65|      19|     116|     427|     445|       8
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  396-  411 (27.31/12.32)	..YMSPYD.PDEGPSITGW
  427-  445 (37.75/20.08)	PIFGSPSSFGGQPPMQTVW
  457-  470 (20.60/ 7.34)	EDLKNPQTY...VPMPT..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.13|      22|      29|     547|     568|       9
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  547-  568 (42.69/21.73)	PPAFSSSSCCLAS.VWHDTLKDR
  578-  600 (34.44/16.29)	PPAILNVQTKVSSaVWERAIADR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14795 with Med16 domain of Kingdom Viridiplantae
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