<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14794

Description Uncharacterized protein
SequenceMTSSSPAPNPNPVPTPPPNPAPNATPASGNAVAASSPPPLKEQQQQSQDGIVAGGGAGADGGAGGGGGGEAVEAAVTGEAMEVDGGAGGAGDVEGGGGSGAAGGAQLASSPATVFRIRLKQPPASLKHKMRVPELCRNFSAVAWCGKLNAIACASETCARIPSSNSSPPFWIPIHILNPERPTECSVFNVRADSPRDFVQFIEWSPTSCPRSLLVANFHGRITIWTQPTKGPVNLVRDSSSWQCEHEWRQDLSVVTKWLSGVSPYRWLPANSSTSNLKAFEEKFLTQHPQNSGWPNILCVCSVFSSGSVQLHWSQWPPQNSAQPRWFSTSKGLLGAGPSGIMAADAIITESGALHVAGVPLVNPSTVVVWEVMPGLGNGIQATAKINATSPLPPSLNPPSWSGFAPLAAYLFSLQDYLVSEAAQTRKQIDNEITEAASIHCCPVSNFSAYVSPEAAAQSATTTTWGSGVTSVAFDPTRGGGVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGSPSSFGGQPPMQTVWSTRVNKSIAPTEDLKNPQTYVPMPTTSDERSSSECSVDRANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGPNFDQVDSYHVNVGSSIAPPAFSSSSCCLASVWHDTLKDRTILKIIRVLPPAILNVQTKVSSAVWERAIADRDFGGV
Length701
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy-0.159
Instability index56.78
Isoelectric point5.66
Molecular weight73905.03
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14794
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.60|      35|      41|      29|      63|       1
---------------------------------------------------------------------------
   29-   63 (63.63/30.64)	GNAV.AASSPPPLKEQQQQSQDG.IVAGGGAGADGGA
   69-  105 (52.97/24.37)	GEAVeAAVTGEAMEVDGGAGGAGdVEGGGGSGAAGGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.01|      16|      41|     450|     465|       2
---------------------------------------------------------------------------
  450-  465 (28.59/15.04)	YVSPEAAAQSATTTTW
  492-  507 (33.42/18.86)	YMSPYDPDEGPSITGW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     155.69|      38|      41|     311|     348|       3
---------------------------------------------------------------------------
  267-  315 (50.44/21.64)	WLPANSSTSNLKAFEEKFLTQHPqnSGwpnILCVCSVF...ssgsvqLH...WSQ
  316-  358 (62.65/28.42)	WPPQNSAQPRWFSTSKGLLGAGP..SG...IMAADAII....tesgaLH...VAG
  359-  403 (42.60/17.30)	VPLVNPSTVVVWEVMPG.LGNG.........IQATAKInatsplppsLNppsWSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.08|      39|      43|     162|     204|       4
---------------------------------------------------------------------------
  162-  204 (66.34/45.72)	PSSNSSP....PFWIPIHILNpeRPTECSVFNVRADSPRDFVQfiEW
  206-  248 (72.73/38.50)	PTSCPRSllvaNFHGRITIWT..QPTKGPVNLVRDSSSWQCEH..EW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.13|      22|      30|     643|     664|       5
---------------------------------------------------------------------------
  643-  664 (42.69/26.39)	PPAFSSSSCCLAS.VWHDTLKDR
  674-  696 (34.44/19.86)	PPAILNVQTKVSSaVWERAIADR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.80|      13|      34|     544|     557|       7
---------------------------------------------------------------------------
  544-  557 (19.02/16.38)	RVNK.SIAPtEDLKN
  580-  593 (21.78/13.27)	RANRlSFDP.YDLPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14794 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MTSSSPAPNPNPVPTPPPNPAPNATPASGNAVAASSPPPLKEQQQQSQDGIVAGGGAGADGGAGGGGGGEAVEAAVTGEAMEVDGGAGGAGDVEGGGGSGAAGGAQL
1
107










Molecular Recognition Features






MoRF SequenceStartStop




1) VFRIRLKQ
114
121