<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14790

Description Uncharacterized protein
SequenceMATPEVVASDSANPQTDEPSRTEEAAPVIEPEEAYDLGAVAAAPAVEEVAAADAPPAPAPAPAPTPTSTSTSSASVPPPPASPASAAAPGPPRPQFAGSPAYMAPPASSPVPAFSYNVLPRPPPPQHMGSGVAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKYGRLLLHD
Length795
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.672
Instability index64.69
Isoelectric point6.07
Molecular weight83871.11
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14790
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     233.31|      37|      39|      44|      80|       1
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   44-   80 (66.37/16.16)	P.AVEE......VAAADAPPA.......PAPAPAPTPTSTSTSS.ASVPPPP
  123-  150 (39.98/ 6.76)	P.PPQH......MGSGVAHQQ.......LASAPAPM..........ARPMPP
  256-  284 (39.32/ 6.53)	N.LDVN......ASKSDAPSA.......PEVS....PHTVQ.....SLPPRP
  295-  333 (43.53/ 8.03)	P.G.QR......PSNLSTPPSllqrptcPAP.PAPSLPQTSPSG.AA...PG
  336-  380 (44.11/ 8.23)	PrATQQqfypsyPSAHGNPSQ.......PLWGYPPQPTSFQQAPfHSYPPGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     231.50|      51|      51|     450|     500|       2
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  450-  497 (79.55/38.01)	....WSAHKT.....EAGVLYYYNALTGE.STYQRPP....GYK.G..ELEKVAAQPVPASWDKI
  498-  542 (64.69/29.37)	AGTdWSIVTT.....SDGKKYYYDNKQKV.SSWQLPP....EV..A..ELNKNADS......GNL
  543-  595 (51.13/21.49)	KGS.......stslqDAGTVANKGEMSGEiSTPAIQT....GGR.DslPLRQTVAPASPSALDLI
  602-  644 (36.13/12.77)	AGA.FSGSSP.....LATPSSTASELNGS.KPSDGAPkeqqGSKnG..EKSK.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     210.62|      41|     120|      81|     121|       3
---------------------------------------------------------------------------
   81-  105 (38.86/10.34)	................................................AS.PASAAAPGP.PR.......PQFAGSPAYMAP
  106-  164 (38.24/10.04)	PASSPVPAFSYNV...LPRppppqhmgsgvahqqlasapapmarpmppA.....ALQPPA.PR........Q......YFGN
  165-  209 (46.29/13.83)	R.....PSFSYNV...VSH...........................anASlPTGQQFQLD.TRtnhavqvPMFA.LPASLQP
  210-  228 (33.88/ 7.99)	P.......................................................APGQlPR.......PG.APFPGHMAP
  383-  423 (53.35/17.15)	PLGAPMVG.TSSVttsLPN.............................IQ.PPG.ITTGD.PK.......EQPSVNPGSVQ.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.14|      15|      18|     662|     678|       4
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  662-  678 (23.67/23.49)	EEHG..P.SKEDciREFKKM
  680-  697 (19.46/10.31)	KERGvaPfSKWE..KELPKI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.98|      16|      16|     699|     714|       6
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  699-  714 (28.69/22.92)	FDS..RFKAIPSHSTRRA
  716-  733 (23.29/16.97)	FDHfvRTRADEERKEKRA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.44|      15|      20|     753|     767|       7
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  753-  767 (28.25/20.63)	IDSKTGYQEFERKWG
  775-  789 (25.19/17.62)	LDKKEREALFKEKYG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14790 with Med35 domain of Kingdom Viridiplantae
Unable to open file!