<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14789

Description Uncharacterized protein
SequenceMPMLACLLRTNHAVQVPMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length876
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.897
Instability index52.61
Isoelectric point8.96
Molecular weight96447.61
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14789
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     419.64|      62|      62|     555|     616|       1
---------------------------------------------------------------------------
  490-  552 (62.88/29.00)	..IREFKKMLKE..RGVAPFSKWEKELPKIVFDSRFKA....IpSHSTRRAIFDHfvRTRAD...EER.KEkrAA
  555-  616 (93.42/46.22)	AAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAA....L.DKKEREALFKE..KVRAL...EEK.VQ..SA
  619-  682 (85.96/42.01)	AVITDFKSMLRECKDII.STSRWTKVKENFRSDPRYKA....V.KHEERENAFNE..YIAELksaEWE.VE..QA
  685-  719 (44.34/18.54)	AKV..............DEQAKLRERER....ETR.........KRKEREEQEME..RV........K.LK..IR
  722-  786 (76.35/36.59)	DATSSYQALLVETIK..DPKASWTESKPKLEKDPQGRAvnpdL.GQGEAEKLFRE..HVKDL...YERcVR..DF
  792-  840 (56.69/25.51)	EAI.APEAATRTTDGGKTAAISWSEAKDLLRSDPRYIK....V.ASKDREAIWRR....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     424.04|      83|      94|      22|     113|       2
---------------------------------------------------------------------------
   22-  102 (136.73/48.95)	..............PASLQPPAPGQLPRPGAPFPGHMA.....P.....N............................................PPG.SIRL...............PFPVPPRTSNILYGA........NQQGNLdvnaSKSDAPSAPEVSPH..TVQS..L...PPRP
  103-  183 (95.00/34.01)	EVFGSVggsapgqrPSNLSTP.PSLLQRPTCPAPP..A.....PslpqtS............................................PSG.AA.................PGAVPR........A........TQQQFY.........PSYP..SAHgnPSQP..LwgyPPQP
  184-  247 (88.62/27.08)	TSFQQ..........APFHSYPPGSLGPLGAPMVGTSSvttslP.....N..........................................iqPPG.......................I.............................TTGDPKEQPSVNPG..SVQS..I...HTSV
  248-  348 (49.23/12.41)	E.................................................qhptgledrsmagiqdsdtwsahkteagvlyyynaltgestyqrPPGyKGEL...........ekvaAQPVPASWDKI.AGT........DWSIV.....TTSDGKKYYYDNKQ..KVSSwqL...PPEV
  378-  454 (54.46/13.76)	EMSGEI............STPAIQTGGRDSLPLRQTVA.....P.....A............................................SPS.ALDLikkklqdagafsgssPLATPSSTASELNGSkpsdgapkEQQG....................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.16|      11|      14|     455|     465|       6
---------------------------------------------------------------------------
  455-  465 (18.80/11.65)	SKNGEKSKDNN
  471-  481 (17.36/10.10)	SDSSSSSDDEE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14789 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEQAKLRERERETRKRKEREEQEMERVKLKI
2) GAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREF
3) PMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDT
4) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKL
5) VRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
688
421
17
343
846
718
493
267
417
876










Molecular Recognition Features






MoRF SequenceStartStop




1) AIWRRYADDMVRKLKQ
2) DLIKKKL
3) GKKYYYD
836
411
328
851
417
334