<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14788

Description Uncharacterized protein
SequenceMATPEVVASDSANPQTDEPSRTEEAAPVIEPEEAYDLGAVAAAPAVEEVAAADAPPAPAPAPAPTPTSTSTSSASVPPPPASPASAAAPGPPRPQFAGSPAYMAPPASSPVPAFSYNVLPRPPPPQHMGSGVAHQQLASAPAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length1058
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.819
Instability index58.93
Isoelectric point8.22
Molecular weight114674.40
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14788
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     405.88|      53|      53|      54|     106|       1
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    3-   44 (36.54/ 6.70)	..................TP...EVVA...............SD.......S.ANPQ.................TDEP.SRTEEAAPvIE...PE...EAY.DLGAVAAA...P
   54-  106 (108.25/34.63)	APPA.......PAPAPAPTP...TSTS...............TS.......S.ASVP.................PPPA.SPASAAAP.GP...PR...PQFAGSPAYMAP...P
  107-  147 (59.00/15.45)	..............ASSPVP....AFS...............YN.......V.LPRP.................PPPQ.HMGSGVA........H...QQLASAPAPMAR...P
  148-  229 (61.38/16.38)	MPPA.......ALQPPAPRQyfgNRPS...............FSynvvshaN.ASLPtgqqfqldtrtnhavqvPMFA.LPASLQPP.APgqlPR...PG.APFPGHMAP...N
  230-  299 (55.51/14.09)	.PPG.......SIRLPFPVP...PRTSnilyganqqgnldvnAS.......K.SDAP.................SAPEvSP.HTVQS.LP...PR...PEVFGSVGGSAPgqrP
  304-  348 (49.63/11.80)	TPPSllqrptcPAP.PAPSL...PQTS.................................................P.....SGAAP.GA..vPRatqQQF..YPSY......P
  353-  383 (35.57/ 6.33)	NPSQ.......PLWGYPPQP...TSFQ...............QA.......PfHSYP.................P.........GSL.GP........................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     435.71|      64|      86|     662|     725|       2
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  589-  628 (46.34/19.38)	....PSA...LDLI...KKKLQD..AG..AFS.............GSS...P........LAT.PS.STASE..LNGS.......................................KPSD
  662-  725 (105.55/52.54)	EEHGPSK...EDCIREFKKMLKE..RGVAPFS.............KWEKELPKIVFDSRFKAI.PSHSTRRA..IFDHFV....................................RTRAD
  729-  791 (82.22/39.48)	KEKRAAQ...KAAVEAYKQLLEEasEGIDSKT.............GYQEFERKWGADPRFAAL..DKKEREA..LFKE......................................KVRAL
  793-  892 (68.35/31.70)	EKVQSAR...NAVITDFKSMLRE.cKDIISTS.............RWTKVKENFRSDPRYKAV..KHEEREN..AFNEYIaelksaeweveqaakakvdeqaklrereretrkrkeREEQE
  893-  959 (70.12/32.70)	MERVKLKirrKDATSSYQALLVE..TIKDPKA.............SWTESKPKLEKDPQGRAVnPDLGQGEAekLFREHV....................................KD...
  962- 1025 (63.14/28.79)	..........ERCVRDFRALVSE...AIAPEAatrttdggktaaiSWSEAKDLLRSDPRYIKV.ASKD.REA..IW........................................RRYAD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.99|      37|      50|     450|     486|       3
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  450-  486 (67.66/35.24)	WSAHKTEAGVLYYYNALTGE.STYQRPPGYKGELEKVA
  502-  537 (61.62/31.49)	WSIVTTSDGKKYYYDNKQKV.SSWQLPPEV.AELNKNA
  545-  573 (31.71/12.95)	SSTSLQDAGTVANKGEMSGEiST...PAIQTG......
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.97|      25|     219|     409|     440|       4
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  409-  440 (36.50/38.91)	GDPKEQPSVNPGSvQSihtsveQHPTGLEDRS
  629-  653 (45.47/27.76)	GAPKEQQGSKNGE.KS......KDNNGNENMS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14788 with Med35 domain of Kingdom Viridiplantae
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