<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14787

Description Uncharacterized protein
SequenceMCNAEGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length629
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-1.072
Instability index42.76
Isoelectric point8.76
Molecular weight71006.25
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14787
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.85|      36|      49|      21|      57|       1
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   21-   57 (63.31/48.05)	WSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEKVA
   73-  108 (67.53/46.63)	WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNKNA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     342.75|      47|      47|     369|     415|       2
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  239-  284 (55.28/26.82)	.KEDCIREFKKMLKE..RG.VAPFSK...........WEKELPKIVFDSRFKAIpSHS....TRR
  305-  352 (61.70/30.75)	AQKAAVEAYKQLLEEA.SEgIDSKTG...........YQEFERKWGADPRFAAL.DKK....ERE
  369-  415 (77.23/40.28)	ARNAVITDFKSMLREC.KD.IISTSR...........WTKVKENFRSDPRYKAV.KHE....ERE
  417-  460 (47.03/21.76)	AFNEYIAELKSAEWE......VEQAA...........KAKVDEQAKLRERERETrKRK....ERE
  472-  521 (55.09/26.70)	RRKDATSSYQALLVETiKD...PKAS...........WTESKPKLEKDPQGRAV.NPDlgqgEAE
  535-  588 (46.41/21.38)	....CVRDFRALVSEA.IA.PEAATRttdggktaaisWSEAKDLLRSDPRYIKV.ASK....DRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.76|      34|      49|     120|     153|       3
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  120-  153 (58.66/33.78)	LQDAGTVANKGEMSGEISTPAIQTGGR..DSLPLRQ
  170-  205 (53.11/29.93)	LQDAGAFSGSSPLATPSSTASELNGSKpsDGAPKEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.99|      12|     166|     354|     365|       5
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  354-  365 (19.89/10.72)	LFKEKVRALEEK
  523-  534 (22.10/12.58)	LFREHVKDLYER
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14787 with Med35 domain of Kingdom Viridiplantae
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