<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14787

Description Uncharacterized protein
SequenceMCNAEGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length629
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy-1.072
Instability index42.76
Isoelectric point8.76
Molecular weight71006.25
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14787
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.85|      36|      49|      21|      57|       1
---------------------------------------------------------------------------
   21-   57 (63.31/48.05)	WSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEKVA
   73-  108 (67.53/46.63)	WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNKNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     342.75|      47|      47|     369|     415|       2
---------------------------------------------------------------------------
  239-  284 (55.28/26.82)	.KEDCIREFKKMLKE..RG.VAPFSK...........WEKELPKIVFDSRFKAIpSHS....TRR
  305-  352 (61.70/30.75)	AQKAAVEAYKQLLEEA.SEgIDSKTG...........YQEFERKWGADPRFAAL.DKK....ERE
  369-  415 (77.23/40.28)	ARNAVITDFKSMLREC.KD.IISTSR...........WTKVKENFRSDPRYKAV.KHE....ERE
  417-  460 (47.03/21.76)	AFNEYIAELKSAEWE......VEQAA...........KAKVDEQAKLRERERETrKRK....ERE
  472-  521 (55.09/26.70)	RRKDATSSYQALLVETiKD...PKAS...........WTESKPKLEKDPQGRAV.NPDlgqgEAE
  535-  588 (46.41/21.38)	....CVRDFRALVSEA.IA.PEAATRttdggktaaisWSEAKDLLRSDPRYIKV.ASK....DRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.76|      34|      49|     120|     153|       3
---------------------------------------------------------------------------
  120-  153 (58.66/33.78)	LQDAGTVANKGEMSGEISTPAIQTGGR..DSLPLRQ
  170-  205 (53.11/29.93)	LQDAGAFSGSSPLATPSSTASELNGSKpsDGAPKEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.99|      12|     166|     354|     365|       5
---------------------------------------------------------------------------
  354-  365 (19.89/10.72)	LFKEKVRALEEK
  523-  534 (22.10/12.58)	LFREHVKDLYER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14787 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEQAKLRERERETRKRKEREEQEMERVKLKI
2) GAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREF
3) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKL
4) VRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
441
174
96
599
471
246
170
629










Molecular Recognition Features






MoRF SequenceStartStop




1) AIWRRYADDMVRKLKQS
2) DPRYIKV
3) EFKKMLK
4) GKKYYYD
5) LDLIKKKLQD
589
576
245
81
163
605
582
251
87
172