<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14786

Description Uncharacterized protein
SequenceVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length538
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-1.108
Instability index43.67
Isoelectric point9.08
Molecular weight60876.22
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14786
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     342.75|      47|      47|     278|     324|       1
---------------------------------------------------------------------------
  148-  193 (55.28/25.67)	.KEDCIREFKKMLKE..RG.VAPFSK...........WEKELPKIVFDSRFKAIpSHS....TRR
  214-  261 (61.70/29.43)	AQKAAVEAYKQLLEEA.SEgIDSKTG...........YQEFERKWGADPRFAAL.DKK....ERE
  278-  324 (77.23/38.50)	ARNAVITDFKSMLREC.KD.IISTSR...........WTKVKENFRSDPRYKAV.KHE....ERE
  326-  369 (47.03/20.85)	AFNEYIAELKSAEWE......VEQAA...........KAKVDEQAKLRERERETrKRK....ERE
  381-  430 (55.09/25.56)	RRKDATSSYQALLVETiKD...PKAS...........WTESKPKLEKDPQGRAV.NPDlgqgEAE
  444-  497 (46.41/20.49)	....CVRDFRALVSEA.IA.PEAATRttdggktaaisWSEAKDLLRSDPRYIKV.ASK....DRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.76|      34|      49|      29|      62|       2
---------------------------------------------------------------------------
   29-   62 (58.66/31.74)	LQDAGTVANKGEMSGEISTPAIQTGGR..DSLPLRQ
   79-  114 (53.11/28.15)	LQDAGAFSGSSPLATPSSTASELNGSKpsDGAPKEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.99|      12|     166|     263|     274|       4
---------------------------------------------------------------------------
  263-  274 (19.89/13.53)	LFKEKVRALEEK
  432-  443 (22.10/15.86)	LFREHVKDLYER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14786 with Med35 domain of Kingdom Viridiplantae
Unable to open file!