<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14785

Description Uncharacterized protein
SequenceQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length805
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.973
Instability index49.53
Isoelectric point8.74
Molecular weight88949.79
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14785
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     415.07|      62|      62|     484|     545|       1
---------------------------------------------------------------------------
  419-  481 (52.31/26.68)	..IREFKKMLKE..RGVAPFS.......KWEkelpkivFDSRFKA....IpSHSTRRAIFDHFVRtrAD...EER.KEkrAA
  484-  545 (95.86/55.25)	AAVEAYKQLLEEASEGIDSKTGYQEFERKWG.......ADPRFAA....L.DKKEREALFKEKVR..AL...EEK.VQ..SA
  548-  611 (88.84/50.65)	AVITDFKSMLRECKDII.STSRWTKVKENFR.......SDPRYKA....V.KHEERENAFNEYIA..ELksaEWE.VE..QA
  614-  648 (41.58/19.64)	AKVDEQAKLRERERE.............................T....R.KRKEREEQEMERV..........K.LK..IR
  651-  715 (78.20/43.67)	DATSSYQALLVETIK..DPKASWTESKPKLE.......KDPQGRAvnpdL.GQGEAEKLFREHVK..DL...YERcVR..DF
  721-  768 (58.28/30.59)	EAI.APEAATRTTDGGKTAAISWSEAKDLLR.......SDPRYIK....V.ASKDREAIWR.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.45|      34|      49|     197|     233|       2
---------------------------------------------------------------------------
  197-  231 (61.54/37.76)	WSAHKTEAGVLYYYNALTGESTYQRPPGYkGELEK
  249-  282 (60.91/31.26)	WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.60|      22|      25|      26|      47|       3
---------------------------------------------------------------------------
   15-   38 (28.91/12.00)	.SAPEVSPHtvqSLPP....RPEVFGSVG
   39-   66 (34.95/16.36)	GSAPGQRPS.nlSTPPsllqRPTCPAPPA
  143-  165 (23.74/ 8.27)	TSLPNIQPPgitTGDP....KEQ..PSVN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.04|      25|      27|      80|     105|       4
---------------------------------------------------------------------------
   88-  113 (46.15/17.56)	QQFYPSYPSA......HGNPSQPLwGYPPQPT
  329-  360 (27.89/ 6.19)	QTVAPASPSAldlikkKLQDAGAFsGSSPLAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14785 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEQAKLRERERETRKRKEREEQEMERVKLKI
2) GAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREF
3) QGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDT
4) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKL
5) VRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
617
350
1
272
775
647
422
196
346
805










Molecular Recognition Features






MoRF SequenceStartStop




1) AIWRRYADDMVRKLKQS
2) ALDLIKKKLQDA
3) DGKKYYYD
4) IREFKKMLK
765
338
256
419
781
349
263
427