<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14784

Description Uncharacterized protein
SequenceMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length498
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-1.142
Instability index43.28
Isoelectric point9.21
Molecular weight56793.86
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP14784
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     519.59|     127|     129|      76|     204|       1
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   76-  204 (196.12/91.13)	GSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKE.RGVAPFSK..........................WEKELPKIVFDSRFKAIpSH..STRRAIFDHFVRTRADEERKEKRAAqKAAVEAYKQLLEEASEGIDSKT.GYQEFER
  207-  335 (186.60/80.55)	GADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLREcKDIISTSR..........................WTKVKENFRSDPRYKAV.KH..EERENAFNEYIAELKSAEWEVEQAA.KAKVDEQAKLRERERETRKRKErEEQEMER
  365-  490 (136.87/57.42)	TESKPKLEKDPQG.......RAVNPDLGQGEA.EKLFREHVKDLYE.RCVRDF..ralvseaiapeaatrttdggktaaisWSEAKDLLRSDPRYIKV...asKDREAIWRRY..................ADDMVRKLKQSDTEKPDTDA.KQQQHRR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14784 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEQAKLRERERETRKRKEREEQEMERVKLKI
2) MSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREF
3) VRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
310
1
468
340
115
498










Molecular Recognition Features






MoRF SequenceStartStop




1) AIWRRYADDMVRKLKQS
2) LLRSDPRYIKV
3) SALDLIKKKLQDA
458
441
30
474
451
42