<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14783

Description Uncharacterized protein
SequenceMPMLACLLRTNHAVQVPMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEK
Length605
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.746
Instability index58.14
Isoelectric point7.18
Molecular weight64676.21
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14783
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.50|      21|      25|      82|     102|       1
---------------------------------------------------------------------------
   82-  102 (40.51/14.86)	SDAPSAPEVSPHTVQSLPP....RP
  107-  130 (30.40/ 9.17)	SVGGSAPGQRPSNL.STPPsllqRP
  169-  183 (29.59/ 8.72)	HGNPSQP......LWGYPP....QP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.73|      33|      49|     268|     304|       2
---------------------------------------------------------------------------
  268-  301 (59.68/34.53)	WSAHKTEAGVLYYYNALTGESTYQRPPGYkGELE
  320-  352 (59.05/29.67)	WSIVTTSDGKKYYYDNKQKVSSWQLPPEV.AELN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.22|      18|      25|     195|     212|       3
---------------------------------------------------------------------------
   27-   46 (30.54/10.07)	PpaPG.QLP.RPGAPFPGHMAP
  221-  240 (25.68/ 7.21)	P..PGiTTGdPKEQPSVNPGSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.75|      19|      49|     367|     385|       5
---------------------------------------------------------------------------
  367-  385 (32.52/19.64)	LQDAGTVANKGEMSGEIST
  417-  435 (31.23/18.54)	LQDAGAFSGSSPLATPSST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     177.12|      56|      66|     478|     534|       7
---------------------------------------------------------------------------
  478-  534 (93.63/58.55)	DDE..EHGPSKEDCIREFKKMLKE..RGVAPFSKWEKELPKIVFDSRFKAIpSHSTRRAIF
  543-  602 (83.48/47.42)	DEErkEKRAAQKAAVEAYKQLLEEasEGIDSKTGYQEFERKWGADPRFAAL.DKKEREALF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14783 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREF
2) PMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDT
3) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKL
421
17
343
493
267
417










Molecular Recognition Features






MoRF SequenceStartStop




1) GKKYYYD
2) LIKKKL
328
412
334
417