<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14782

Description Uncharacterized protein
SequenceMATPEVVASDSANPQTDEPSRTEEAAPVIEPEEAYDLGAVAAAPAVEEVAAADAPPAPAPAPAPTPTSTSTSSASVPPPPASPASAAAPGPPRPQFAGSPAYMAPPASSPVPAFSYNVLPRPPPPQHMGSGVAHQQTLPFQAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length1058
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.823
Instability index58.93
Isoelectric point8.22
Molecular weight114821.57
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14782
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|     499.30|      43|      43|     279|     321|       1
---------------------------------------------------------------------------
   36-   65 (31.54/ 6.49)	DL..........................GA.......V.AAAP...........AvEE.....VAAADAP.........PA.......PAPaPAP.T
   75-  109 (56.41/17.30)	SVP...P..PP....A............SP.......ASAAAP...........G.P......PR..............PQFAGSPAYMAP.PAS.S
  120-  160 (45.56/12.58)	PRP...P..PP....QH.M.........GSgvahqqtLPFQAP...........M.AR.....P....MP.........PAALQ......P.PAPrQ
  161-  211 (30.73/ 6.14)	YFG...N..RPsfsyNV.V.........SH.......ANASLP..........tG.QQfqldtRTNHAVQ.........VPMFALPASLQP.PA...
  212-  245 (42.74/11.36)	..PgqlP..RP...........................GAPFP...........G.HM.....APN...P.........PGSIRLP.FPVP.PRT.S
  247-  271 (31.38/ 6.42)	IL................Y.........GA..........NQQ...........G..........NLDVN.........AS.....KSDAP.SAP.E
  279-  321 (84.97/29.71)	SLP...P..RP....EV.F.........GS.......VGGSAP...........G.QR.....PSNLSTP.........PSLLQRPTCPAP.PAP.S
  325-  351 (31.70/ 6.56)	............................TS.......PSGAAP...........G.AV.....PR..AT..............QQQFYPSY.PSA.H
  352-  379 (39.01/ 9.73)	GNP...S..QP..............................LW...........G.YP.....PQ....P.........TSFQQAPFHSYP.PG...
  380-  434 (38.84/ 9.66)	SLG...PlgAP....MVgT.........SS.......VTTSLP...........N.IQ.....PPGITTGdpkeqpsvnPGSVQSIHTSVE.QHP.T
  525-  590 (31.31/ 6.39)	QLP.......P....EV..aelnknadsGN.......LKGSSTslqdagtvankG.EM.....SGEISTP..aiqtggrDSLPLRQTV.AP.ASP.S
  598-  631 (35.09/ 8.03)	KLQ...D..A..................GA.......FSGSSP...........L.AT.....PS..STA.........SEL..NGSKPSD.GAP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     509.63|     124|     129|     638|     764|       2
---------------------------------------------------------------------------
  638-  750 (174.47/93.77)	...........KN.GEKSK....DNNGNENMSDSSSSSDDEEHGPSK...EDCIREFKKMLKE.RGVAPFS.............KWEKELPKIVFDSRFKAI.PSHSTRRA..IFDHFVRTRADEE.RKEKRA.AQKAAVEAYKQLLEEAS
  754-  869 (155.79/86.67)	DSKTGYQEFERKW.GADPRfaalDKKEREALFKEKVRALEEKVQSAR...NAVITDFKSMLREcKDIISTS.............RWTKVKENFRSDPRYKAV..KHEEREN..AFNEYIAELKSAE.WEVEQA.A.KAKV...........
  870-  958 (92.65/43.84)	DEQAKLRERER..eTRKRK....EREEQE.M..........ERVKLKirrKDATSSYQALLVE.TIKDPKA.............SWTESKPKLEKDPQGRAVnPDLGQGEAekLFREHVK...............................
  962- 1052 (86.72/42.72)	..................................................ERCVRDFRALVSE.A.IAPEAatrttdggktaaiSWSEAKDLLRSDPRYIKV.AS.KDREA..IWRRY....ADDMvRKLKQSdTEKPDTDAKQQQHRRSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.68|      15|      51|     450|     464|       3
---------------------------------------------------------------------------
  450-  464 (29.46/20.92)	WSAHKTEAGVLYYYN
  502-  516 (29.22/20.68)	WSIVTTSDGKKYYYD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14782 with Med35 domain of Kingdom Viridiplantae
Unable to open file!