<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14782

Description Uncharacterized protein
SequenceMATPEVVASDSANPQTDEPSRTEEAAPVIEPEEAYDLGAVAAAPAVEEVAAADAPPAPAPAPAPTPTSTSTSSASVPPPPASPASAAAPGPPRPQFAGSPAYMAPPASSPVPAFSYNVLPRPPPPQHMGSGVAHQQTLPFQAPMARPMPPAALQPPAPRQYFGNRPSFSYNVVSHANASLPTGQQFQLDTRTNHAVQVPMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDTWSAHKTEAGVLYYYNALTGESTYQRPPGYKGELEKVAAQPVPASWDKIAGTDWSIVTTSDGKKYYYDNKQKVSSWQLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKLQDAGAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREFKKMLKERGVAPFSKWEKELPKIVFDSRFKAIPSHSTRRAIFDHFVRTRADEERKEKRAAQKAAVEAYKQLLEEASEGIDSKTGYQEFERKWGADPRFAALDKKEREALFKEKVRALEEKVQSARNAVITDFKSMLRECKDIISTSRWTKVKENFRSDPRYKAVKHEERENAFNEYIAELKSAEWEVEQAAKAKVDEQAKLRERERETRKRKEREEQEMERVKLKIRRKDATSSYQALLVETIKDPKASWTESKPKLEKDPQGRAVNPDLGQGEAEKLFREHVKDLYERCVRDFRALVSEAIAPEAATRTTDGGKTAAISWSEAKDLLRSDPRYIKVASKDREAIWRRYADDMVRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
Length1058
PositionUnknown
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy-0.823
Instability index58.93
Isoelectric point8.22
Molecular weight114821.57
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14782
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|     499.30|      43|      43|     279|     321|       1
---------------------------------------------------------------------------
   36-   65 (31.54/ 6.49)	DL..........................GA.......V.AAAP...........AvEE.....VAAADAP.........PA.......PAPaPAP.T
   75-  109 (56.41/17.30)	SVP...P..PP....A............SP.......ASAAAP...........G.P......PR..............PQFAGSPAYMAP.PAS.S
  120-  160 (45.56/12.58)	PRP...P..PP....QH.M.........GSgvahqqtLPFQAP...........M.AR.....P....MP.........PAALQ......P.PAPrQ
  161-  211 (30.73/ 6.14)	YFG...N..RPsfsyNV.V.........SH.......ANASLP..........tG.QQfqldtRTNHAVQ.........VPMFALPASLQP.PA...
  212-  245 (42.74/11.36)	..PgqlP..RP...........................GAPFP...........G.HM.....APN...P.........PGSIRLP.FPVP.PRT.S
  247-  271 (31.38/ 6.42)	IL................Y.........GA..........NQQ...........G..........NLDVN.........AS.....KSDAP.SAP.E
  279-  321 (84.97/29.71)	SLP...P..RP....EV.F.........GS.......VGGSAP...........G.QR.....PSNLSTP.........PSLLQRPTCPAP.PAP.S
  325-  351 (31.70/ 6.56)	............................TS.......PSGAAP...........G.AV.....PR..AT..............QQQFYPSY.PSA.H
  352-  379 (39.01/ 9.73)	GNP...S..QP..............................LW...........G.YP.....PQ....P.........TSFQQAPFHSYP.PG...
  380-  434 (38.84/ 9.66)	SLG...PlgAP....MVgT.........SS.......VTTSLP...........N.IQ.....PPGITTGdpkeqpsvnPGSVQSIHTSVE.QHP.T
  525-  590 (31.31/ 6.39)	QLP.......P....EV..aelnknadsGN.......LKGSSTslqdagtvankG.EM.....SGEISTP..aiqtggrDSLPLRQTV.AP.ASP.S
  598-  631 (35.09/ 8.03)	KLQ...D..A..................GA.......FSGSSP...........L.AT.....PS..STA.........SEL..NGSKPSD.GAP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     509.63|     124|     129|     638|     764|       2
---------------------------------------------------------------------------
  638-  750 (174.47/93.77)	...........KN.GEKSK....DNNGNENMSDSSSSSDDEEHGPSK...EDCIREFKKMLKE.RGVAPFS.............KWEKELPKIVFDSRFKAI.PSHSTRRA..IFDHFVRTRADEE.RKEKRA.AQKAAVEAYKQLLEEAS
  754-  869 (155.79/86.67)	DSKTGYQEFERKW.GADPRfaalDKKEREALFKEKVRALEEKVQSAR...NAVITDFKSMLREcKDIISTS.............RWTKVKENFRSDPRYKAV..KHEEREN..AFNEYIAELKSAE.WEVEQA.A.KAKV...........
  870-  958 (92.65/43.84)	DEQAKLRERER..eTRKRK....EREEQE.M..........ERVKLKirrKDATSSYQALLVE.TIKDPKA.............SWTESKPKLEKDPQGRAVnPDLGQGEAekLFREHVK...............................
  962- 1052 (86.72/42.72)	..................................................ERCVRDFRALVSE.A.IAPEAatrttdggktaaiSWSEAKDLLRSDPRYIKV.AS.KDREA..IWRRY....ADDMvRKLKQSdTEKPDTDAKQQQHRRSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.68|      15|      51|     450|     464|       3
---------------------------------------------------------------------------
  450-  464 (29.46/20.92)	WSAHKTEAGVLYYYN
  502-  516 (29.22/20.68)	WSIVTTSDGKKYYYD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14782 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DEQAKLRERERETRKRKEREEQEMERVKLKI
2) GAFSGSSPLATPSSTASELNGSKPSDGAPKEQQGSKNGEKSKDNNGNENMSDSSSSSDDEEHGPSKEDCIREF
3) MATPEVVASDSANPQTDEPSRTEEAAPVIEPEEAYDLGAVAAAPAVEEVAAADAPPAPAPAPAPTPTSTSTSSASVPPPPASPASAAAPGPPRPQFAGSPAYMA
4) PAFSYNVLPRPPPPQHMGSGVAHQQTLPFQAPMARPMPPAALQPPAPRQY
5) QLPPEVAELNKNADSGNLKGSSTSLQDAGTVANKGEMSGEISTPAIQTGGRDSLPLRQTVAPASPSALDLIKKKL
6) QVPMFALPASLQPPAPGQLPRPGAPFPGHMAPNPPGSIRLPFPVPPRTSNILYGANQQGNLDVNASKSDAPSAPEVSPHTVQSLPPRPEVFGSVGGSAPGQRPSNLSTPPSLLQRPTCPAPPAPSLPQTSPSGAAPGAVPRATQQQFYPSYPSAHGNPSQPLWGYPPQPTSFQQAPFHSYPPGSLGPLGAPMVGTSSVTTSLPNIQPPGITTGDPKEQPSVNPGSVQSIHTSVEQHPTGLEDRSMAGIQDSDT
7) VRKLKQSDTEKPDTDAKQQQHRRSSDPPRRR
870
603
1
112
525
197
1028
900
675
104
161
599
449
1058










Molecular Recognition Features






MoRF SequenceStartStop




1) AIWRRYADDMVRKLKQS
2) GKKYYYD
3) IREFKKMLKE
4) LDLIKKKLQD
5) RTEEAAPVIEPEEAYDLGAVAAAPAVEEVAAA
1018
510
672
592
21
1034
516
681
601
52