<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14768

Description Uncharacterized protein
SequenceRSQGSIQRLLTRRERGRGGEGRRNRDAKSQTQTLGDVARERMGAAEAPALAPASGAGGELLLERRVMAAVKASEARGDPPLLRAVEVARLVAGEPGAGLPSADLAGILVSNLCFAHNSPSLWKLLDQAMSSRLLCPLHVLALLTARVLPQRRAQPEAYRLYLELLKGNITSPSLSPLPVPNRDKITKSIDAALQLSKSYGVSGMDFGHVVILFVLILVTKLIDSVLEDCGISSGMAQEQEGVYPTEGAQPMDLDVKGVSALKQNEHREQLRRNNTVMALEVLHMMAADKKIQAFLRLICLNMPDKFSVLSQRLTLIEAHKMALERLLPTSHKIDDLVMYIWRVSNLDYQPNNKRLVGILGNLRSSNSMLGQLTGAGRAACWIIFDIYLENAMDGKHLGGISAIEIIKEMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILMEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANVAASKAAIFRANYKVGGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTNAYLWPGYVVLTGHSKDTALPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVVAALMPLCEAFGSMPPPSNHRSTIFDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSMGSFGEVPTQPIYIDSFPKLRAWYVQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEILEAVPYVLEAVLTACSHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALQSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVGLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSNGSDITASRGVGALMGESITGQQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVINCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHNLALSLLERGGPKAISVVVETLLH
Length1371
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.06
Grand average of hydropathy0.110
Instability index49.97
Isoelectric point8.58
Molecular weight148479.46
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14768
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     294.77|     103|     414|     628|     751|       1
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  639-  704 (91.12/60.81)	...........................................................................................................................................................AAK.............................................IVCGASLVRGWNIQ..EHVVRMVVKLLSPPLPSDSSLQGSMSHYlSQKSTLNA..ILLGVSYV.DAVH
  705-  745 (30.21/24.26)	IFSLYGMVPDVVAALMPLCeaFGSM..PPPSNhRSTIFDETSV....................................................................................................................................................................................................................................
  858-  921 (70.58/30.48)	...........................................ysvfscaflcllrlwkfykppqeyclagrggsvrleltldylvlmhnsriefpnssatstnsgssmgsfgevptqpiyidsfpklrawyvqnqaciastlsglgntnpvhqvANK.............................................IL...SMICRKMTK..SGVVSGNLSSASSSSVSGSSLSTSDDSY..QRPTLPAweILEAVPYVlEAVL
 1078- 1208 (102.86/55.19)	IRSPFGRDKDAVAQLIQSC..FSSFlrSSPSN.GSDITASRGV...................................................................................................................galmgesitgqqglhfpmapgfiylrtcrtfhdtyfvsemilrqvINCSHKLANGWSSNgpPH.....LKSGRPPLSGAASMA.......SQVAMLGA..GLLCV........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     254.39|      69|     414|      53|     121|       2
---------------------------------------------------------------------------
   53-  121 (115.06/62.78)	ASGAGGELLLERRVMAAVKASEARGDPPLLRA....VEVARLVAGEPGAGLP.SAD.LAGILVSNL..CFAHNS.PSL
  475-  537 (90.84/48.06)	ACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPpsslVNVANVAASK............AAIFRANY..KVGGGN.PSM
 1006- 1055 (48.49/22.32)	.......................RGVPPML.P....LPMAALVGLTITFKLDrSLDyIHGIIGQALenCAGGSSwPSM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.34|      14|     414|     840|     854|       3
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  840-  854 (22.04/18.54)	CiASTLSGLGNTNPV
 1257- 1270 (27.30/17.55)	C.GSLLWGSEKTSPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     263.87|      89|     166|     132|     297|       4
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  135-  232 (124.14/197.79)	CpLHVLALLTarVLPQRRAQPEAYRLYLELLKGniTSPSLSPLpV............PNRDKITkSIDAALQLSKSY.G.VSGMDFGHVVILFVLILVTKLIDSVLedCGIS
  299-  401 (139.73/65.17)	C.LNMPDKFS..VLSQRLTLIEAHKMALERLLP..TSHKIDDL.VmyiwrvsnldyqPNNKRLV.GILGNLRSSNSMlGqLTGAGRAACWIIFDIYLENAMDGKHL..GGIS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14768 with Med33 domain of Kingdom Viridiplantae
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