<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14766

Description Uncharacterized protein
SequenceMALERLLPTSHKIDDLVMYIWRVSNLDYQPNNKRLVGILGNLRSSNSMLGQLTGAGRAACWIIFDIYLENAMDGKHLGGISAIEIIKEMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILMEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANVAASKAAIFRANYKVGGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTNAYLWPGYVVLTGHSKDTALPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVVAALMPLCEAFGSMPPPSNHRSTIFDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSMGSFGEVPTQPIYIDSFPKLRAWYVQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEILEAVPYVLEAVLTACSHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALQSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVGLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSNGSDITASRGVGALMGESITGQQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVINCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHNLALSLLERGGPKAISVVVETLLH
Length1051
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy0.171
Instability index49.33
Isoelectric point7.95
Molecular weight113753.49
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14766
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     653.60|     164|     164|     655|     818|       1
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  410-  573 (191.84/93.02)	.PPPSNHRSTIFDEtsVYSVFSCAFL......C.......LLRLWKFYK.....PPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEfpNSSATS.......tnSGSSMGSFGEVPTQpiyidsfpKLRAWY..VQNQACIASTLSglGNTNPVHQVANKILSMIC....RKMTKSGvvSGNLSSAS..SSSVSGSSLS..............
  655-  818 (290.46/144.36)	WPSPGAALQSIEDE..VKEILASAGV..QIHSC.......YPRGVPPML.....PLPMAALVGLTITFKLDRSLDYIHGIIGQALE..NCAGGS.........SWPSMPIIGALWTQ........KVRRWHD.FIVLSCIRSPFG..RDKDAVAQLIQSCFSSFL....RSSPSNG..SDITASRG..VGALMGESITGQQGLHFPMA..PG
  821-  985 (171.30/82.33)	Y......LRTCRTF..HDTYFVSEMIlrQVINCshklangWSSNGPPHLksgrpPLSGAASMASQVA............MLGAGLL..CVAGGPllvqvlyeeTLPTL.LLSA...Q........E.QMLEDpGPVASTLQ...G..Y...AMANMLFFC.GSLLwgseKTSPVMK..LSFLSRRPrvVGTHM.DFIAGVLDGHILLGcdPG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     256.43|      85|     166|      92|     190|       2
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   92-  190 (122.29/108.28)	TAQAINEASWQETfkaLWISalrLVQRArePLEGP.....IPHLDTRLCMLLALIPLAIAAILMEETDA....CGAegnkSLPRRLGLVSSLQDLVqySGLLVPP....SSL
  259-  356 (134.14/81.96)	TGHSKDTALPQES...PWVN...FMQGA..PLSDPlknalIATPASSVAELDKLYHIALNGSEQEKSAAakivCGA....SLVRGWNIQEHVVRMV..VKLLSPPlpsdSSL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.93|      44|     214|     359|     404|       5
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  359-  404 (74.84/60.68)	SMSHYlsQKSTLNA..ILLGVSYV.DAVHIFSLYGMVP..DVVAALMPLCE
  575-  623 (64.09/45.12)	SDDSY..QRPTLPAweILEAVPYVlEAVLTACSHGRISsrDMTTSLRDLVD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14766 with Med33 domain of Kingdom Viridiplantae
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