<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14765

Description Uncharacterized protein
SequenceMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILMEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANVAASKAAIFRANYKVGGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTNAYLWPGYVVLTGHSKDTALPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVVAALMPLCEAFGSMPPPSNHRSTIFDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSMGSFGEVPTQPIYIDSFPKLRAWYVQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEILEAVPYVLEAVLTACSHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALQSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVGLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSNGSDITASRGVGALMGESITGQQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVINCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHNLALSLLERGGPKAISVVVETLLH
Length963
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy0.182
Instability index49.44
Isoelectric point7.97
Molecular weight103927.15
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14765
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     630.63|     160|     161|     587|     746|       1
---------------------------------------------------------------------------
  297-  396 (121.62/52.93)	....................................IFSLYG..MVPDVVAALMPLCeaFGS.M.....PPPSNhR..STIFDETS..V..........................................................................................................YSVF.SCAF...........lC.......LLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEfpNSSATS
  399-  485 (56.87/21.30)	SGSSMGSFGEVPTQpiyidsfpKLRAWY..VQNQACIASTLSglGNTNPVHQVANKI..LSMIC....RKMTKS.GvvSGNLSSAS..SSSVSGSSLS...............................................................................................................................................................................
  561-  642 (102.43/43.55)	..................................................................................................tsddsyqrptlpaweileavpyvleavltacshgrissrdmttslrdlvdflpaslaaivsyfsaeitrgiwkavPMNGTEWP.S..PG...AALQSIEDEVKEILASAGV..QIHS.C.......YPRGVPPMLPLPMAALVGLTITFKLDRSLDYIHGIIGQALE..NCAGGS
  643-  804 (256.91/119.00)	SWPSMPIIGALWTQ........KVRRWHD.FIVLSCIRSPFG..RDKDAVAQLIQSC..FSSFL....RSSPSN.G..SDITASRG..VGALMGESIT...........................................................................GQQGLHFPMA..PGF..IYLRTCRTFHDTYFVSEMIlrQVIN.CshklangWSSNGPPHLKSGRPPLSGAA.......SMASQVAMLGAGLL..CVAGGP
  811-  914 (92.81/38.86)	YEETLPTL..LLSA........QEQMLEDpGPVASTLQ...G..Y...AMANMLFFC...GSLLwgseKTSPVM.K..LSFLSRRPrvVGTHM.DFIA...........................................................................GVLDGHILLGcdPGTwkAYV.SCFVFLVVKFV....................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     207.93|      68|     161|      21|      99|       2
---------------------------------------------------------------------------
   21-   99 (98.37/83.40)	WISalrLVQRArePLEGP.....IPHLDTRLCMLLALIPLAIAAILMEETDA....CGAegnkSLPRRLGLVSSLQDLVqySGLLVPP
  185-  261 (109.56/64.23)	WVN...FMQGA..PLSDPlknalIATPASSVAELDKLYHIALNGSEQEKSAAakivCGA....SLVRGWNIQEHVVRMV..VKLLSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.96|      23|     214|     271|     295|       5
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  271-  295 (37.14/27.69)	SMSHYlsQKSTLNA..ILLGVSYV.DAV
  487-  512 (33.83/19.04)	SDDSY..QRPTLPAweILEAVPYVlEAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14765 with Med33 domain of Kingdom Viridiplantae
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