<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14764

Description Uncharacterized protein
SequenceMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVVAALMPLCEAFGSMPPPSNHRSTIFDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSMGSFGEVPTQPIYIDSFPKLRAWYVQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEILEAVPYVLEAVLTACSHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALQSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVGLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSNGSDITASRGVGALMGESITGQQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVINCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHNLALSLLERGGPKAISVVVETLLH
Length711
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.08
Grand average of hydropathy0.204
Instability index51.99
Isoelectric point8.06
Molecular weight76955.30
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14764
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.36|      68|      78|     312|     389|       1
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  323-  403 (106.39/73.59)	QSIEDEVKEILASAgvqIHSCYPRGVPPMLPL.......................PMAALVGLTIT......FKLDRSLDY............IHGIIGQALENCAGgsswpsmpiiGALWT
  404-  514 (87.96/49.71)	QKVRRWHDFIVLSC...IRSPFGRDKDAVAQLiqscfssflrsspsngsditasrGVGALMGESITgqqglhFPMAPGFIYlrtcrtfhdtyfVSEMILRQVINCSH........klANGWS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     204.93|      61|      71|     103|     173|       2
---------------------------------------------------------------------------
   75-  129 (71.93/46.90)	.HRSTI.FDE.TSVYSVF.SC.................AF.lCLLRLWkfYKPPQEyCLA....GRGGSVRLELTLDYLVL
  130-  203 (99.53/78.80)	MHNSRIEFPN.SSATSTN.SGSSMGSFGevptqpiyiDSF..PKLRAW..YVQNQA.CIAstlsGLGNTNPVHQVANKILS
  209-  247 (33.47/15.07)	MTKSGVVSGNlSSASSSSvSGSSLSTSD.........DSYqrPTLPAW.................................
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.46|      33|      48|     532|     579|       3
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  532-  569 (47.38/50.17)	ASMASQVAMLGAGLLCvagGPLLVQvlYEETLPTLLLS
  582-  614 (61.07/28.83)	ASTLQGYAMANMLFFC...GSLLWG..SEKTSPVMKLS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.75|      24|     254|      30|      53|       5
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   30-   53 (41.91/23.93)	LNAILLGVSYV.DAVHIFSLYGMVP
  249-  270 (25.20/11.87)	...ILEAVPYVlEAVLTACSHGRIS
  289-  309 (35.64/19.41)	LAAI...VSYF.SAEITRGIWKAVP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14764 with Med33 domain of Kingdom Viridiplantae
Unable to open file!