<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14760

Description Uncharacterized protein
SequenceEMSKTAQAINEASWQETFKALWISALRLVQRAREPLEGPIPHLDTRLCMLLALIPLAIAAILMEETDACGAEGNKSLPRRLGLVSSLQDLVQYSGLLVPPSSLVNVANVAASKAAIFRANYKVGGGNPSMIGQSDSSTKAVGNMLHLIVEACISRNLIDTNAYLWPGYVVLTGHSKDTALPQESPWVNFMQGAPLSDPLKNALIATPASSVAELDKLYHIALNGSEQEKSAAAKIVCGASLVRGWNIQEHVVRMVVKLLSPPLPSDSSLQGSMSHYLSQKSTLNAILLGVSYVDAVHIFSLYGMVPDVVAALMPLCEAFGSMPPPSNHRSTIFDETSVYSVFSCAFLCLLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEFPNSSATSTNSGSSMGSFGEVPTQPIYIDSFPKLRAWYVQNQACIASTLSGLGNTNPVHQVANKILSMICRKMTKSGVVSGNLSSASSSSVSGSSLSTSDDSYQRPTLPAWEILEAVPYVLEAVLTACSHGRISSRDMTTSLRDLVDFLPASLAAIVSYFSAEITRGIWKAVPMNGTEWPSPGAALQSIEDEVKEILASAGVQIHSCYPRGVPPMLPLPMAALVGLTITFKLDRSLDYIHGIIGQALENCAGGSSWPSMPIIGALWTQKVRRWHDFIVLSCIRSPFGRDKDAVAQLIQSCFSSFLRSSPSNGSDITASRGVGALMGESITGQQGLHFPMAPGFIYLRTCRTFHDTYFVSEMILRQVINCSHKLANGWSSNGPPHLKSGRPPLSGAASMASQVAMLGAGLLCVAGGPLLVQVLYEETLPTLLLSAQEQMLEDPGPVASTLQGYAMANMLFFCGSLLWGSEKTSPVMKLSFLSRRPRVVGTHMDFIAGVLDGHILLGCDPGTWKAYVSCFVFLVVKFVPTWLRDIKLDTLKKIAVGLRSWHEHNLALSLLERGGPKAISVVVETLLH
Length964
PositionTail
OrganismHordeum vulgare subsp. vulgare (Domesticated barley)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Pooideae> Triticodae> Triticeae> Hordeinae> Hordeum.
Aromaticity0.07
Grand average of hydropathy0.178
Instability index49.40
Isoelectric point7.84
Molecular weight104056.26
Publications
PubMed=23075845

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14760
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     630.63|     160|     161|     588|     747|       1
---------------------------------------------------------------------------
  298-  397 (121.62/68.79)	....................................IFSLYG..MVPDVVAALMPLCeaFGS.M.....PPPSNhR..STIFDETS..V..........................................................................................................YSVF.SCAF...........lC.......LLRLWKFYKPPQEYCLAGRGGSVRLELTLDYLVLMHNSRIEfpNSSATS
  400-  486 (56.87/27.72)	SGSSMGSFGEVPTQpiyidsfpKLRAWY..VQNQACIASTLSglGNTNPVHQVANKI..LSMIC....RKMTKS.GvvSGNLSSAS..SSSVSGSSLS...............................................................................................................................................................................
  562-  643 (102.43/56.62)	..................................................................................................tsddsyqrptlpaweileavpyvleavltacshgrissrdmttslrdlvdflpaslaaivsyfsaeitrgiwkavPMNGTEWP.S..PG...AALQSIEDEVKEILASAGV..QIHS.C.......YPRGVPPMLPLPMAALVGLTITFKLDRSLDYIHGIIGQALE..NCAGGS
  644-  805 (256.91/154.58)	SWPSMPIIGALWTQ........KVRRWHD.FIVLSCIRSPFG..RDKDAVAQLIQSC..FSSFL....RSSPSN.G..SDITASRG..VGALMGESIT...........................................................................GQQGLHFPMA..PGF..IYLRTCRTFHDTYFVSEMIlrQVIN.CshklangWSSNGPPHLKSGRPPLSGAA.......SMASQVAMLGAGLL..CVAGGP
  812-  915 (92.81/50.52)	YEETLPTL..LLSA........QEQMLEDpGPVASTLQ...G..Y...AMANMLFFC...GSLLwgseKTSPVM.K..LSFLSRRPrvVGTHM.DFIA...........................................................................GVLDGHILLGcdPGTwkAYV.SCFVFLVVKFV....................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     207.93|      68|     161|      22|     100|       2
---------------------------------------------------------------------------
   22-  100 (98.37/99.03)	WISalrLVQRArePLEGP.....IPHLDTRLCMLLALIPLAIAAILMEETDA....CGAegnkSLPRRLGLVSSLQDLVqySGLLVPP
  186-  262 (109.56/76.26)	WVN...FMQGA..PLSDPlknalIATPASSVAELDKLYHIALNGSEQEKSAAakivCGA....SLVRGWNIQEHVVRMV..VKLLSPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.96|      23|     214|     272|     296|       5
---------------------------------------------------------------------------
  272-  296 (37.14/27.29)	SMSHYlsQKSTLNA..ILLGVSYV.DAV
  488-  513 (33.83/18.77)	SDDSY..QRPTLPAweILEAVPYVlEAV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14760 with Med33 domain of Kingdom Viridiplantae
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