<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14707

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMDLAYVCEWEKWPKSTHCPSVPLACAWSCRNLIAFTTDLRNDDQDLTRMIHILDTEHPWDVHSINSEHSEAITCLEWDQSGSRLLSADADGQIKCWTMADHLANSWESPVGSLVEGDPIVALSWLHNGVKLALHVEKSAASSFGEKFSRVKFSPSLTLFGGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVATADGSSASPVQFYKVCVSVVSEKCRIDTEILPSLFMRCTTDLNRRDRVPAITHLKFLARDMSEQVLLCASSQTTSVVECWSLRKEGLPVNNIFQQLSPAGLALAFHDGSVHIVHRLSLQSMAVFYSSAAPRSMDEPAIKRPRTTGPAVHFKAMQLSWTSLALVGIDNHGRLSMLRISPSLGHALDVGLALRHLLFLLEYCMVTGYDWWDILLHVQPGMVQSLVEKLHEEYTRQKAELQQVLSTRILAMKASLCKLSPCTVTRVCDYHAKLFLIAISSTLKSLLRPHVLNTPDKSPGDRLTEICTKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLASLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGPTSEPDEALVDECCLLPSQLLIPNLDWLPVSDGLVSRLQPKQPLRLHFGKAPTLPGSATTLQLDGLIRAPGQPKMDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNKATAVKQWEQRWIKNCLCGGLWRRLPLSYP
Length777
PositionTail
OrganismSus scrofa (Pig)
KingdomMetazoa
Lineage
Aromaticity0.07
Grand average of hydropathy0.022
Instability index52.62
Isoelectric point7.50
Molecular weight86269.30
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14707
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.10|      34|     317|     355|     392|       1
---------------------------------------------------------------------------
  300-  337 (52.02/31.47)	RKEGLPVNNIFQQLSPAGLALAFHDGsvHivHRLSLQS
  359-  392 (62.08/37.46)	RTTGPAVHFKAMQLSWTSLALVGIDN..H..GRLSMLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.00|      22|      32|     679|     700|       3
---------------------------------------------------------------------------
  679-  700 (42.42/24.25)	QPKQP..LRLHFGKAPTLPGSATT
  712-  735 (39.58/22.19)	QPKMDhlRRLHLGAYPTEECKACT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.21|      18|     247|     418|     439|       5
---------------------------------------------------------------------------
  418-  439 (30.15/25.43)	MVTGYDWwdilLHVQPGMVQSL
  661-  678 (33.06/17.01)	LIPNLDW....LPVSDGLVSRL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14707 with Med16 domain of Kingdom Metazoa
Unable to open file!