<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14651

Description Prostate tumor overexpressed 1
SequenceMVSPRRALRRSGAGGTLGGRRRSPRPLRVRAVRSRSWTPCPPSPQALRIRARSVPPMERTQVCPVGPSSPRLSLGGLAVSQHQFSGKLLAWSGVLEWQERRRPYSDSMMKLKQTLPCQVYLNQGENLKTEQWSKKLVMQLIPKQLLATLGPLFRNSQLAQFLFETETTSLLFFPQAGLLFPYISPCEVRVVLIVYSSKKKIFMGCIPSDQSGFVRALRQVITACKQVCGLPRPVINNKFLAWSGIMEWQEPRPEPNSRSKRWLLSHIYVNQGEILRTEQWPRDLYLQLIPKQLLTMLVPLFQNLCLVQFHFTKDLETLKSLSRVMDNGFVSAGMRMLMLLYSSEEKMFVGLIPHDQSSFLSSVQRVLANQQQNLEQEQQQRGMGG
Length385
PositionUnknown
OrganismCavia porcellus (Guinea pig)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Mammalia> Eutheria> Euarchontoglires> Glires> Rodentia> Hystricomorpha> Caviidae> Cavia.
Aromaticity0.08
Grand average of hydropathy-0.253
Instability index64.36
Isoelectric point10.42
Molecular weight43936.97
Publications
PubMed=21993624

Function

Annotated function 
GO - Cellular Component
nucleoplasm	GO:0005654	IEA:Ensembl

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14651
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.44|      23|      66|     116|     142|       1
---------------------------------------------------------------------------
  120-  142 (44.62/34.72)	YLNQGENLKTEQWSKKLVMQLIP
  268-  290 (45.82/23.77)	YVNQGEILRTEQWPRDLYLQLIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     394.62|     113|     148|      87|     226|       2
---------------------------------------------------------------------------
   23-  119 (77.28/50.25)	.........................................SPRPLRVRAV....RSRSWTPCPPSPQALRIRA.RSVPPMERtQvcpvgpssprlslgglavsqhqfsgKLLAWSGVLEWQERrRPYSDSmmKLKQTLPCQV
  143-  267 (194.55/117.83)	KQLLATLGPLFRNSQLAQFLFETETTSLLFFPQAgLLFPYISPCEVRVVLIVYSSKKKIFMGCIPSDQSGFVRALRQVITACK.Q..............vcglprpvinnKFLAWSGIMEWQEP.RPEPNS..RSKRWLLSHI
  291-  372 (122.79/68.36)	KQLLTMLVPLFQNLCLVQFHFTKDLETLKSLSRV.MDNGFVS.AGMRMLMLLYSSEEKMFVGLIPHDQSSFLSSVQRVLANQQ.Q..........................................................
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14651 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MVSPRRALRRSGAGGTLGGRRRSPRPLRVRAVRSRS
1
36










Molecular Recognition Features






MoRF SequenceStartStop




1) ALRIRAR
2) RRALRRS
46
5
52
11