<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14624

Description Uncharacterized protein (Fragment)
SequenceESLSHLSIQSLLHVRELRGELLQLHQPASDGSGSSGFEQLAATARKLAESVQSLDQLAEKMALVARQQYQQAVPPDQLSLYPNILLADADPERHAATTQALFGERWRADVCGLVRDGLATRALLHARARAPAAAAATASAAASRSGGGRQSELATQSQQMRNFLERELSRSYRTQCERHHRDSDRQLSVSVEPASPCTNLAVVTTDCFHVLLFTRGLVIEMAQVLGLGEPLPRPNQAWPSSHFRCFRQLTAGLLQLLVAGRQSGGGTSLLQLLIKWLCAFRNLFMQRCARCDRILRDQLPPTWFDFRKDDRPVYHLACKSAVCAA
Length325
PositionTail
OrganismMacrostomum lignano
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Platyhelminthes> Rhabditophora> Macrostomorpha> Macrostomida> Macrostomidae> Macrostomum.
Aromaticity0.06
Grand average of hydropathy-0.225
Instability index51.79
Isoelectric point9.03
Molecular weight35871.52
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14624
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.18|      20|      35|     226|     249|       1
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  226-  249 (33.66/31.84)	GLGEPLPRPNQAWPSShfrcFRQL
  264-  283 (36.52/21.83)	GGGTSLLQLLIKWLCA....FRNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.67|      41|     114|       6|      47|       2
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    6-   47 (62.99/38.12)	LSIQSLLHVRElRGELLQLHQPASDGSGSSGFEQ..LAATARKL
  118-  160 (60.68/32.73)	LATRALLHARA.RAPAAAAATASAAASRSGGGRQseLATQSQQM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14624 with Med27 domain of Kingdom Metazoa
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