<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14617

Description Uncharacterized protein (Fragment)
SequenceMAFAPGSGGGGGAPQGQQQAQIMIPPNIPAEAYLRLTTPQQQLLQQQLAQQQAQQLAQQQAQQQAQQQLAQQQAQQQARQQAEQQAQARIQAEQQARQQAEQQSRLQAEQAANELIRAQNIRDVNPEQAQQLAQQQLAQQQAQQQAQQQARQQAEQRIQTPQGKTVSQALQYIQSMQMQQGTEGTPNNAESQEEMLAQMLNEQQQQMLQNQAREAQHRQMLISSTPAPRGGLTMGTPIGIVRREASTPATLSSLPVVTTTASRVAVRTPIAVQPIKQNSNPSILPSSASASASGSHQILASSLSKSFDQPSTSKASSGSGGNESMSDHISRIISENEVILQGDPVIRKKRPYHRQIGAQSSVDHDSNSGGSTRTSPGPKDSRMLQAASRSQSLFELSGSKHFMGSLTSGQPLLRSIQTHNDPNYTPECIYCKLTFPNEAGLQAHEVVCGKKREFEKAQQAAAENNPHSALKRRHTHQDATFAMNSPLAAATPSNMPGPSEPVKKMRKEDSFDDDNSPSTSDGTRSSFPKSLPKEWEKHMLTLNNLASIIPPFVQAFLAKAIQSETLTLSPGALQHIYDKYNISPIAIQQFLHFASQLNNRQLEEIIAECEKLYLRNAEEWTNQGIIQPLPADDLEIVEMIKQQDALGKGQVPELLVSTFAILDHCSRRRDITDPAMNHVVIKLLHANGKDITDVPMRAFNTLDGCNDRFISHMRELHKLNDVNDRLLNTLKTNPQSATTPLFHVVNEQSACLKFLLREYGMVHLTIIASVAKILGISSQENDGVDGVEGEEEEQQPECSQNGQTSQNGQNGQNDQNGQNGTAAFNGVFIKQEIVTPPPEYGNDDDSDDDCIIEVIDEDQQRQIDMAAAAARNNRNAAPMSFLGQDQDEKKPPKMMMMQQMQQQFAGGSRMDNQGAGHTGGQVDGQEIKKELLVPKNEEPSQQEVVAMSLPLRLEDLRLEPQTSGDTDKPYWLVIDGDIGGRPSFMAAGTQSRANRSRNITSETYVTVPRQQPTFAEQDGTYSMYANWATPVHNDVETKMNLSFMGMVSLRRRTGQHEFWKYTTANKDLGHYRMTHSSFWDISTKIRDRQASMSDEKPLEETQDYDAQFIERLVGGNYTASDLQSSSTSTIAIPILMAPEETSSDQPGPSGLPPLLMRSPRPVTPKLSIPQVEETKQQEVVVPVSEEVAPINEILTAPVEVPTKHESDVEVNMEKSPEARPSVIINDDVGRFRRDRPVKYVSRIRPKHDQIIGGHRTDEVYVYVRGRGRGRYICDRCGIRCKKPSMLKKHIKYGSHSFSISHTDVRAFNCTACNFSFKTKGNLTKHLSSKTHLRRISNIQAGNESDGTTPSTSSMMNMEEGYHKNQPLFDDYDNKYCSSSDEEDYDHLNGMQAEHKFKFGQEHILMERNAHTPPTRWCLIEAENDHYWPSPDRRSCMSAPPVAMQRDFDDRAMTPISGASSPFPNALARSPFSSISPRSRLVSENQFNDSAFSSASQTDEPSSSQNLNLHGHNSSHTNNLMTSNVNFLKKDDEWRCDECDRTFRKEYEMTLHKHTHNIELQQSKNRMYQCNECRMLFRTKALCSKHLEKTHGHNMDDSMITCIDPLATTQSVLGGPSTSNPRSFMCVDCDIGFRKHGILAKHLRSKTHVMKLESLQRLPVDTLSLITKKDNGACLNDIDTTDCERARISLLTIVEKLRSERDREESSSAQPSVALTLDLLRALAANTPQPPAATAPSSSDTPPISQSLPVGVASSSTSVSAVSATGSPSNVSCVSSFNNSTMSPNPTVIPQVFLTPQPQSPSELCSTHFIEKSITPEIEISVKQLNNSPKPILRIPEVQAIVNSQLEIEPSTPPAQLANHHHLSHSANTSPVMPSPAIFIQRKRSESSLDNPGPTLVKQAKVWNPPPPEPVVVAQQLVFIPPASETPETMTIRPHANRPKPIPDTTNCPICHHDLPNPIELQTHIHVDHFQMRDGAEYRCPRRFCGLNYETIERLRTHVRNHYLSDYQRLLEERLLLTDVVYPSEDPTPETPSSPKKDDVASNKYTTPFKLISDHHEVYTDNMGPSTSSQSPKTPN
Length2075
PositionTail
OrganismCaenorhabditis latens
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.05
Grand average of hydropathy-0.708
Instability index64.43
Isoelectric point6.09
Molecular weight230664.37
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14617
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     271.60|      32|      32|      49|      80|       1
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   17-   47 (35.28/12.59)	.QQQAQI..MIPPNIPAEAYLRLT..TPQQQllQ.Q..Q
   49-   80 (60.96/27.04)	AQQQAQQ..LAQQQAQQQAQQQLA..QQQAQ..Q.QARQ
   82-  114 (42.22/16.49)	AEQQAQAriQAEQQARQQAEQQ.S..RLQAE..Q.AANE
  117-  148 (51.31/21.61)	RAQNIRD..VNPEQAQQLAQQQLA..QQQAQ..Q.QAQQ
  150-  183 (40.33/15.43)	ARQQAEQ..RIQTPQGKTVSQALQyiQSMQM..Q.QGTE
  189-  219 (41.50/16.09)	AESQEEM..LAQMLNEQ..QQQML..QNQAR..EaQHRQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     165.19|      31|      31|    1767|    1797|       2
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 1726- 1761 (26.45/ 8.13)	..TPQP...........paatapsS...SDTPPIS.QS................LPVGVASSSTS.VSAV
 1762- 1791 (50.15/22.92)	SATGSP......................SNVSCVS.SF................NNSTMSPNPTV.IPQV
 1792- 1837 (28.65/ 9.50)	FLTPQP................qsP...SEL.CST.HFieksitpeieisvkqlNN...SPKPILrIPEV
 1844- 1880 (26.66/ 8.26)	QLEIEP...............stpPaqlANHHHLShSA................NTSPVMPSPAI.FIQ.
 1902- 1948 (33.29/12.40)	WNPPPPepvvvaqqlvfippasetP...ETMTIRP.HA................NRPKPIPDTTN.CP..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     169.09|      31|      31|    1523|    1553|       3
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 1305- 1325 (32.19/16.18)	............................RAFNCTACNFSFKTKGNLT...KH
 1523- 1553 (57.16/34.45)	N........VNFLK............KDDEWRCDECDRTFRKEYEMTL.HKH
 1556- 1585 (41.90/23.29)	N........IELQQ...........sKNRMYQCNECRMLFRTK...ALcSKH
 1593- 1641 (37.84/20.32)	NmddsmitcIDPLAttqsvlggpstsNPRSFMCVDCDIGFRKHGILA...KH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     154.81|      40|      40|     872|     911|       4
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  790-  817 (39.23/19.20)	........EEEEQQPE....CSQNGQTSQNGQNGQ.......ND.QNG
  835-  876 (50.66/27.30)	TPPPEYGNDDDSDDDCIIEVIDEDQQR.....QIDmaaaaarNN.RNA
  877-  915 (64.92/37.41)	APMSFLGQDQDEKKPPKMMMMQQMQQQFAGGSRMD.........nQGA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.59|      19|      19|    1469|    1487|       6
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 1469- 1487 (32.44/19.44)	SPFSSISPRSRLVSENQFN
 1489- 1507 (32.15/19.18)	SAFSSASQTDEPSSSQNLN
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.70|      13|      19|    1133|    1151|       7
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 1133- 1145 (24.96/ 8.05)	PILM.AP............EETSSDQ
 1153- 1178 (10.74/ 7.13)	PLLMrSPrpvtpklsipqvEETKQQE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.71|      19|      25|     286|     305|       8
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  286-  305 (26.23/17.36)	SSASaSASGSHQILASSLSK
  313-  331 (33.48/18.41)	SKAS.SGSGGNESMSDHISR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.80|      14|      25|    1229|    1253|       9
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 1229- 1247 (21.72/31.87)	GRFRRDRpvkyvSRIRPKH
 1269- 1282 (30.08/11.56)	GRYICDR.....CGIRCKK
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.64|      16|      25|     492|     508|      10
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  492-  508 (28.11/21.87)	PSNMPG..PSEPvKKMRKE
  517-  534 (25.53/14.12)	PSTSDGtrSSFP.KSLPKE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     105.62|      24|      25|    1422|    1445|      11
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 1338- 1357 (24.59/10.60)	IQAGNESDGTTPSTSSMMNM.....
 1419- 1442 (46.88/28.23)	IEAENDHYWPSPDRRSCMSAP.PVA
 1443- 1465 (34.15/18.16)	MQRDFDDRAMTP..ISGASSPfPNA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.36|      32|      40|    2000|    2031|      12
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 2000- 2031 (56.81/37.19)	NHYLSDYQRLLEERLLLTDVVYPS.EDPTPETP
 2042- 2074 (54.55/35.36)	NKYTTPFKLISDHHEVYTDNMGPStSSQSPKTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.10|      16|      18|     450|     466|      13
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  450-  466 (23.69/18.07)	KKREFEKaQQAA.AENNP
  470-  486 (25.41/14.36)	LKRRHTH.QDATfAMNSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.61|      13|      33|     548|     560|      14
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  548-  560 (21.55/13.35)	IIPPFVQAFLAKA
  582-  594 (22.10/13.92)	ISPIAIQQFLHFA
  605-  617 (17.97/ 9.59)	IIAECEKLYLRNA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     148.79|      27|      48|    1013|    1039|      15
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  962-  982 (35.28/19.45)	TSGDTD.KPY.......WLV.IDGDIGGRP
  983- 1005 (33.90/18.39)	SFMAA..GTQS.RAN..RSRNITS..ETYV
 1013- 1039 (50.46/31.09)	TFAEQD.GTYSMYAN..WATPVHNDVETKM
 1062- 1085 (29.15/14.74)	TTANKDlGHYRMTHSsfW......DISTKI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.07|      25|      33|     225|     251|      16
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  225-  251 (39.72/32.48)	TPAPRggLTMGTPIGIVR.REASTPATL
  259-  284 (38.35/23.54)	TTASR..VAVRTPIAVQPiKQNSNPSIL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14617 with Med15 domain of Kingdom Metazoa
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