<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14602

Description Uncharacterized protein (Fragment)
SequenceMSGQGQQPNLTAQQQQMILQQQQQHMMRQQHMQQQQMHQRQMQQQVQPTGQFQRARTPQMQQHAPGGSPGGSHLQMHPHLQPQGHMQPRSPLVGSQLNAPGSVQPGNPATPQMMQQQMGMNQPMSLPAPHVSRPASVAPPASVPPNLQATGGGPASNQMDPMGGQPQYPLHLQPQQTPSRPGSQQGQHVNVSHGGPQSVQQPGSIQRPGSVLAPGSLQQPESLAAPPSNSVIGGPQSVQGYGPGSVQPPGSAQAPSSVQPGSSFAPGSVQAPASQQPPSSLQPPPSAASSSAVGGAAAAQNSKEPLKPNEEQIRMVQDPVDLVRNLVQKDLRNSVVEMNKRGADLVRQREERNVNESDRAQFKRAANDFHAVCDEIDRTLTTVMETAKQLIKLEKVFMDRNSKELDGELMVNSVQSFVDNTDIVQKMFDETIGGVTASMEKMRRRQKKWEDLQKEKQNNEDVEMIE
Length466
PositionTail
OrganismCaenorhabditis latens
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.02
Grand average of hydropathy-0.873
Instability index72.51
Isoelectric point7.96
Molecular weight50546.04
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14602
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     278.23|      37|      38|     190|     226|       1
---------------------------------------------------------------------------
   78-  110 (39.40/ 9.29)	..PHLQPQGHM..QP..RS...PlvGSQLnA.........PGSVQ.PGNPAT.
  111-  140 (45.22/11.74)	......PQMMQ..QQ..MGMNQP..MSLP.A.........P.HVSRPASVAPP
  148-  187 (36.63/ 8.12)	QATGGGPASNQ.mDPmgGQPQYP.....L.HlqpqqtpsrPGS.QQ.....GQ
  190-  226 (74.85/24.22)	NVSHGGPQSVQ..QP..GSIQRP..GSVL.A.........PGSLQQPESLAAP
  229-  259 (43.35/10.95)	NSVIGGPQSVQgyGP..GSVQPP..GSAQ.A.........PSSVQ........
  260-  284 (38.76/ 9.02)	..............P..GSSFAP..GSVQ.A.........PASQQPPSSLQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.16|      19|      22|      13|      33|       2
---------------------------------------------------------------------------
   16-   36 (34.36/15.16)	QMilQQQQQHMMRQQHMQ..QQQ
   41-   61 (30.81/ 9.18)	QM..QQQVQPTGQFQRARtpQMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.24|      22|      22|     313|     334|       3
---------------------------------------------------------------------------
  313-  334 (35.90/27.23)	IRMVQDPVDLVRNLVQKDLRNS
  336-  357 (34.34/25.74)	VEMNKRGADLVRQREERNVNES
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14602 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EMNKRGADLVRQREERNVNESDRAQFKRAA
2) MSGQGQQPNLTAQQQQMILQQQQQHMMRQQHMQQQQMHQRQMQQQVQPTGQFQRARTPQMQQHAPGGSPGGSHLQMHPHLQPQGHMQPRSPLVGSQLNAPGSVQPGNPATPQMMQQQMGMNQPMSLPAPHVSRPASVAPPASVPPNLQATGGGPASNQMDPMGGQPQYPLHLQPQQTPSRPGSQQGQHVNVSHGGPQSVQQPGSIQRPGSVLAPGSLQQPESLAAPPSNSVIGGPQSVQGYGPGSVQPPGSAQAPSSVQPGSSFAPGSVQAPASQQPPSSLQPPPSAASSSAVGGAAAAQNSKEPLKPNEEQIRMVQDPVDL
337
1
366
322










Molecular Recognition Features






MoRF SequenceStartStop




NANANA