<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP14601

Description Uncharacterized protein (Fragment)
SequenceMPPPPPPPPPPPPPPMAAAPPPSNGARNALLGDIQKGFKLKKAVTNDRSAPAVGKVVGSGASSVSSNGNSGNGNGAAAKPPSMSGGMGGLFANGLPSKPSENKIRRATTNIGPPPSAMTAPPIPPPVPAPAPAVDGKKPSIVSSVTSQSSAPVPPPPPPISVLSSKPTPPPPPPAQQKPSIQSDREQFRTMRPMRPSNDAKPAMIRRSGSSEDIPQTTLSGSRMARPSAPPPARPAAPPPPVPTSVPSIAQMSSRFQSPAVSRIADDAPPPPPRIASKTSGAVNHSRAPLPPSSSSAPSIASAPAPPPPPPQPASPYPGMMSTATVSPNVPFHPLNRFHFLPLSQLPPPPKCGSGNSRSTFGVLQNSLLAQSGLASLHSDLSHILTTIDPKQDVVSNGEGDEEEEVGDEEEEEGAGEGLNLDNVHEDVVAPLTTSSTGTASTSEEGSGGSGGAQEDDGAGSSAPRSQEETGRRSTEDEEDEPMQL
Length485
PositionHead
OrganismCaenorhabditis latens
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.02
Grand average of hydropathy-0.631
Instability index85.81
Isoelectric point5.79
Molecular weight49209.27
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
actin binding	GO:0003779	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP14601
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     552.13|     146|     149|       4|     152|       1
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    2-  132 (217.43/45.79)	.......................PpPPPPPP......PPPPPP....MAAA......................PPP...SNGA........RNALLGDiQKGF.....KLKKAV..TNDrSAPAVGKVVGSGASSVSSNGNSGNG.N.................................GAAAKPPSMSGGMGG.LFANGLP.S...KPSENKIRRATTNIGPPPSAMTAPPIPPPVPAPAP
  133-  277 (210.37/42.75)	AVDGKK....PSiVSSVTSQSSAPvPPPPPPisvlssKPTPPP..............................PPP...AQ.Q........KPSIQSD.REQF.....RTMRPMrpSND.AKPAMIRRSGS.SEDIPQTTLSGSRmA.................................RPSAPPPARPAAPPP.....PVPtS...VPS...IAQMSSRFQSPAVSRIADDAPPPPPRIAS
  282-  482 (124.33/21.13)	AVNHSRaplpPS.SSSAPSIASAP.APPPPP......PQPASPypgmMSTAtvspnvpfhplnrfhflplsqlPPPpkcGSGNsrstfgvlQNSLLA..QSGLaslhsDLSHIL..TT...........IDPKQDVVSNGEGDEE.EevgdeeeeegageglnldnvhedvvaplttsstGTASTSEEGSGGSGGaQEDDGAG.SsapRSQEETGRRSTEDEEDEP.................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP14601 with Med11 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MPPPPPPPPPPPPPPMAAAPPPSNGARNALLGDIQKGFKLKKAVTNDRSAPAVGKVVGSGASSVSSNGNSGNGNGAAAKPPSMSGGMGGLFANGLPSKPSENKIRRATTNIGPPPSAMTAPPIPPPVPAPAPAVDGKKPSIVSSVTSQSSAPVPPPPPPISVLSSKPTPPPPPPAQQKPSIQSDREQFRTMRPMRPSNDAKPAMIRRSGSSEDIPQTTLSGSRMARPSAPPPARPAAPPPPVPTSVPSIAQMSSRFQSPAVSRIADDAPPPPPRIASKTSGAVNHSRAPLPPSSSSAPSIASAPAPPPPPPQPASPYPGMMSTATVSPN
2) RFHFLPLSQLPPPPKCGSGNSRSTFGVLQNSLLAQSGLASLHSDLSHILTTIDPKQDVVSNGEGDEEEEVGDEEEEEGAGEGLNLDNVHEDVVAPLTTSSTGTASTSEEGSGGSGGAQEDDGAGSSAPRSQEETGRRSTEDEEDEPMQL
1
337
329
485










Molecular Recognition Features






MoRF SequenceStartStop




1) AKPAMIR
2) NGARNALLGDIQKGFKLKKAVTN
200
24
206
46